View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807_low_7 (Length: 231)

Name: NF1807_low_7
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807_low_7
NF1807_low_7
[»] chr1 (14 HSPs)
chr1 (1-225)||(13085868-13086092)
chr1 (98-221)||(13271444-13271567)
chr1 (15-221)||(13081076-13081282)
chr1 (48-221)||(12964086-12964259)
chr1 (44-221)||(13244732-13244909)
chr1 (128-191)||(19279409-19279472)
chr1 (49-226)||(30368314-30368491)
chr1 (83-207)||(13094242-13094366)
chr1 (49-191)||(13070417-13070559)
chr1 (83-191)||(13129671-13129779)
chr1 (83-191)||(13161364-13161472)
chr1 (51-226)||(13100812-13100987)
chr1 (83-187)||(13010616-13010720)
chr1 (45-221)||(13065424-13065600)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13085868 - 13086092
Alignment:
Q  1 catatatcaataagcattcttaacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggaga 100  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13085868 catatatcaatgagcattcttaacttcaaaaaactgataatgtttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggaga 13085967  T
Q  101 acaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13085968 acaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaa 13086067  T
Q  201 tatctttcccaagacaacttcgagg 225  Q
    |||||||||||||||||||||||||    
T  13086068 tatctttcccaagacaacttcgagg 13086092  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 13271444 - 13271567
Alignment:
Q  98 agaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgc 197  Q
    |||||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||| || ||    
T  13271444 agaacaatcgaaaccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagc 13271543  T
Q  198 taatatctttcccaagacaacttc 221  Q
    ||||||||||||||||||| ||||    
T  13271544 taatatctttcccaagacagcttc 13271567  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 13081282 - 13081076
Alignment:
Q  15 cattcttaacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactct 114  Q
    |||||| ||||| | ||||||  ||||| ||||||||||| |||||| ||| || |||||| || || |||||||||||||| || | ||||||||| ||    
T  13081282 cattctgaactttataaaacttgtaatgcttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccct 13081183  T
Q  115 tggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaaga 214  Q
     ||| |||  || ||||||||||| || || |||||||||||  |||| |  ||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  13081182 aggaattattgagtgaccttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaaga 13081083  T
Q  215 caacttc 221  Q
    || ||||    
T  13081082 cagcttc 13081076  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 12964259 - 12964086
Alignment:
Q  48 atcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtat 147  Q
    ||||||| ||||||  ||| |||||||| || || ||||||| ||| || ||||| |||| ||| |||||||| ||| | ||||||||||| |||| |||    
T  12964259 atcaaatgcatctttgactgactttgaccttcaaaccatgtttcatacgaagaaccatagcaacccttggagtaacaaagtgaccttccaccacttctat 12964160  T
Q  148 gtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttc 221  Q
    |||||||||||| || | |  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  12964159 gtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttc 12964086  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 13244909 - 13244732
Alignment:
Q  44 ttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 143  Q
    ||||||||||| |||||| |||| |||| ||| || || || |||| |||||| |  |||||||||  |||  | |||||||  ||||||||||| || |    
T  13244909 ttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacct 13244810  T
Q  144 gtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttc 221  Q
    ||||| ||||||||||||| | || |||||||||||||||||||||||| | ||||| ||||||||||| ||||||||    
T  13244809 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttc 13244732  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 19279472 - 19279409
Alignment:
Q  128 tgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaa 191  Q
    ||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  19279472 tgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaa 19279409  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 30368491 - 30368314
Alignment:
Q  49 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 148  Q
    |||||| |||||| || |||| ||||| || || ||||||| ||| |  || |||| |||| | || || |||||||  ||||||||||| || ||||||    
T  30368491 tcaaatgcatcttttagtaaccttgacgttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg 30368392  T
Q  149 tgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggt 226  Q
    |||||||||||||| |  |||||||||||||| ||||||||||| |  |||| |||||| || | |||||||| ||||    
T  30368391 tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggt 30368314  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 13094242 - 13094366
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||||||||||| ||| | ||||||||| ||||| |    
T  13094242 ccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13094341  T
Q  183 tcatttgaacaatgctaatatcttt 207  Q
    |||||||||  |  |||||||||||    
T  13094342 tcatttgaatgaaactaatatcttt 13094366  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 13070559 - 13070417
Alignment:
Q  49 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 148  Q
    |||||| |||||| || | ||||| || ||||| ||||||| |||| | |||||||  ||||   |||| |||||||  ||||||||||| || ||||||    
T  13070559 tcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggtgaccttccaccacctgtatg 13070460  T
Q  149 tgaaacttccataatatagcagctgcaaccattttcatttgaa 191  Q
    |||||||||  ||| | ||||||||| ||||| ||||||||||    
T  13070459 tgaaacttctgtaacaaagcagctgcgaccatcttcatttgaa 13070417  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 13129671 - 13129779
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||||||||||  ||| | ||||||||| ||||| |    
T  13129671 ccatgtttcatgcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatct 13129770  T
Q  183 tcatttgaa 191  Q
    |||||||||    
T  13129771 tcatttgaa 13129779  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 13161364 - 13161472
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    ||||||| |||||| ||||  | |||||  ||||| ||||||   ||||||||||| || |||||||||||||||| ||| | ||||||||| ||||| |    
T  13161364 ccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13161463  T
Q  183 tcatttgaa 191  Q
    |||||||||    
T  13161464 tcatttgaa 13161472  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 13100812 - 13100987
Alignment:
Q  51 aaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtg 150  Q
    |||| |||||| || | |||||||| || || ||||||| |||| | ||||||| |||||   | || |||| ||  ||||||||||| || ||||||||    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  151 aaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggt 226  Q
    |||||||  ||| | ||||||||| ||||| ||||||||||  | ||||||||| || || | |||||||| ||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggt 13100987  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 13010616 - 13010720
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    |||||||  ||||| |||| |||||||| | |||| ||||  | |||||||||||| ||||||||| |||| |||||||| | | ||||||| ||||| |    
T  13010616 ccatgttttatgcgaagaataatagaaagttttggggttatggcatgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatct 13010715  T
Q  183 tcatt 187  Q
    |||||    
T  13010716 tcatt 13010720  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 13065600 - 13065424
Alignment:
Q  45 tatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttg 144  Q
    |||||||||| |||||| || | ||| |||| || || ||||||| ||| | |||   ||||||||  ||||||||||||| |||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  145 tatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttc 221  Q
    ||||  ||||||||||| |||||| || ||| |||| ||||||| ||| | | | |||||||| || | ||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttc 13065424  T

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