View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_high_1 (Length: 741)
Name: NF18081_high_1
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 19 - 729
Target Start/End: Complemental strand, 4831724 - 4831014
Alignment:
| Q |
19 |
cttatcctgtttaaaattaatgtattaatcatcaacaccttaatcaccatgctttctttatttaccttcttaactctgaatcatagttatggtatttatt |
118 |
Q |
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| T |
4831724 |
cttatcctgtttaaaattaatgtattaatcatcaacaccttaatcaccatgctttctttatttaccttcttaactctgaatcatagttatggtatttatt |
4831625 |
T |
|
| Q |
119 |
tatgtgagtgattaaatattaattaggcatattgatcaatacactttttaatttaagctaggcttggtgagtgttaaaatttgatcatgtctttcaagga |
218 |
Q |
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| T |
4831624 |
tatgtgagtgattaaatattaattaggcatattgatcaatacactttttaatttaagctaggcttggtgagtgttaaaatttgatcatgtctttcaagga |
4831525 |
T |
|
| Q |
219 |
tcacactcacaaatcaatatgcctagtagtagtaatacttatgtgtgtgctaaaattcaaaacatttgtgcttgtaggttgttaccataaaaagtatctc |
318 |
Q |
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| T |
4831524 |
tcacactcacaaatcaatatgcctagtagtagtaatacttatgtgtgtgctaaaattcaaaacatttgtgcttgtaggttgttaccataaaaagtatctc |
4831425 |
T |
|
| Q |
319 |
acacacacaaacctcttaatttatgtttttaccgaatcattttatttcttcatgcacaataggaccactaggtacggagatgatgtttatgacaggatat |
418 |
Q |
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| T |
4831424 |
acccacacaaacctcttaatttatgtttttactgaatcattttatttcttcatgcacaataggaccactaggtacggagatgatgtctatgacaggatat |
4831325 |
T |
|
| Q |
419 |
ggtactgcgatccagacttgttgcacccatataacgattggtatccgttgaatttagatgaatccataaatatggaattggaaaccaataataatgctta |
518 |
Q |
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| T |
4831324 |
ggtactgcgatccagacttgttgcacccatataacgattggtatccgttgaatttagatgaatccataaatatggaattggaaaccaataataatgctta |
4831225 |
T |
|
| Q |
519 |
taaattaccagatgaagtgttgaggagtgcagtccaaccaggaaatgtgtcacgcactttgggatttacctatgcagatttgggtccacggtctccactc |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4831224 |
taaattaccagatgaagtgttgaggagtgcagtccaaccaggaaatgtgtcacacactttgggatttacctatgcagatttgggtccacggtctccactc |
4831125 |
T |
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| Q |
619 |
atagaccctaattctgagtattatgtctactttcactttactgaaattgtgaaactttctgatgggnnnnnnnnnnnnntcaatatcaccctaaactccc |
718 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4831124 |
atagaccgtaattctgagtattatgtctactttcactttactgaaattgtgaaactttctgatgggaaaaaaagaaaaatcaatatcaccctaaactccc |
4831025 |
T |
|
| Q |
719 |
aatctgtgctc |
729 |
Q |
| |
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||||||||||| |
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| T |
4831024 |
aatctgtgctc |
4831014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 449 - 586
Target Start/End: Complemental strand, 4795299 - 4795162
Alignment:
| Q |
449 |
ataacgattggtatccgttgaatttagatgaatccataaatatggaattggaaaccaataataatgcttataaattaccagatgaagtgttgaggagtgc |
548 |
Q |
| |
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|||| ||||||||||| ||| ||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||| || |||||| | |
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| T |
4795299 |
ataatgattggtatccattgggtttggatgaatccataaatatggatccagaaatcaataatgatgcttataaattaccatccaaagtattaaggagtac |
4795200 |
T |
|
| Q |
549 |
agtccaaccaggaaatgtgtcacgcactttgggattta |
586 |
Q |
| |
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|| ||||||| |||||||||| | | |||||||||| |
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| T |
4795199 |
agcccaaccaaataatgtgtcacaccccttgggattta |
4795162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 684
Target Start/End: Complemental strand, 4849715 - 4849658
Alignment:
| Q |
627 |
taattctgagtattatgtctactttcactttactgaaattgtgaaactttctgatggg |
684 |
Q |
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||||| ||| |||||||||||||||||||| | |||||||| |||| |||| |||||| |
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| T |
4849715 |
taattatgattattatgtctactttcacttcaatgaaattgcgaaattttcagatggg |
4849658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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