View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_10 (Length: 351)
Name: NF18081_low_10
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 48452704 - 48453027
Alignment:
| Q |
18 |
gttctctcattaatatgaaacatggaaaaccattatacgttcttatatgagcacgagtttttctcgtccaacttcatcttcaccttggagtttttcaatg |
117 |
Q |
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| T |
48452704 |
gttctctcattaatatgaaacatggaaaaccattatacattcttatatgagcacgagtttttctcgtccaacttcatcttcaccttggagtttttcaatg |
48452803 |
T |
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| Q |
118 |
atcccttgacacccattttgaaaccacacaggatcataatttcaatctgatgagtgatcttctctccaatagggactcaagtttgtgggcatattttaac |
217 |
Q |
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| T |
48452804 |
atcccttgacacccattttgaaaccacacaggatcataatttcaatccgatgagtgatcttctctccaatagggactcaagtttgtgggcatattttaac |
48452903 |
T |
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| Q |
218 |
attcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataactccgaccttgtcatgtgagcatatatcaacatatccttgataa |
317 |
Q |
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| T |
48452904 |
attcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataactccgaccttttcatgtgagcatatatcaacatatccttgataa |
48453003 |
T |
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| Q |
318 |
ctttctgatttttaatgacctttg |
341 |
Q |
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| T |
48453004 |
ctttctgatttttaacgacctttg |
48453027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 48106960 - 48107044
Alignment:
| Q |
193 |
ctcaagtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataact |
275 |
Q |
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| T |
48106960 |
ctcaagtttgtgggcatattttagaacattcataacaaattcaatttcataccaattgccaacacagcctcctaattcaataact |
48107044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 47929510 - 47929426
Alignment:
| Q |
193 |
ctcaagtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataact |
275 |
Q |
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| T |
47929510 |
ctcaagtttgtgtgcatattttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataact |
47929426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 47050924 - 47051007
Alignment:
| Q |
193 |
ctcaagtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataac |
274 |
Q |
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| T |
47050924 |
ctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
47051007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 48895819 - 48895761
Alignment:
| Q |
215 |
aacattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataa |
273 |
Q |
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| T |
48895819 |
aacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaataa |
48895761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 48105968 - 48106052
Alignment:
| Q |
193 |
ctcaagtttgtgggcatattttaa--cattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataact |
275 |
Q |
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| T |
48105968 |
ctcaagtttatgaacatattttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataact |
48106052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 50460367 - 50460278
Alignment:
| Q |
217 |
cattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataactccgaccttgtcatgtgagcatatatcaacat |
306 |
Q |
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| T |
50460367 |
cattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactctgatctcgtcatgagagcatatttcaacat |
50460278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 50460528 - 50460453
Alignment:
| Q |
75 |
tttttctcgtccaacttcatcttcaccttggagtttttcaatgatcccttgacacccattttgaaaccacacagga |
150 |
Q |
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| T |
50460528 |
tttttctcgtccaactacatcttcactttgaagcttttgtctaatcctttgacacccattttgagaccacacagga |
50460453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 39403645 - 39403565
Alignment:
| Q |
197 |
agtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataact |
275 |
Q |
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| T |
39403645 |
agtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataact |
39403565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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