View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_11 (Length: 340)
Name: NF18081_low_11
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 33533479 - 33533163
Alignment:
| Q |
21 |
catagagaacctgcaagattaaagaaagagaatcgatatggcagaaatataataacctgcatttttgcctcaaatccagtttgaccagcttgttcaatat |
120 |
Q |
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| T |
33533479 |
catagagaacctgcaagattaaaaaaagagaatcgatatggcagaaatataataacctgcatttttgcctcaaatccagtttgaccagcttgttcaatat |
33533380 |
T |
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| Q |
121 |
tttctgatcctgccatgtcgacaagcattagccgtcctcccacagttgggacatcaagtattacctggtcagaatcgaaaacaagtcatcagttaccaat |
220 |
Q |
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| T |
33533379 |
tttctgatcctgccatgtcgacaagcattagccgtcctcccacagttgggacatcaagtattacctggtcagaatcgaaaacaagtcatcagttaccaat |
33533280 |
T |
|
| Q |
221 |
caatgaaacttaataaattttacaagaaccaccttccacaaaatcaactataccatgcagtgacttctggaactcctgtcattacaaagtgtgcttttaa |
320 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33533279 |
caatgaaacttaataaactttacaagaaccaccttccacaaaatcaactataccatgcagtgacttctggaactcctgtcattacaaagtgtgcttttaa |
33533180 |
T |
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| Q |
321 |
caatcctttgcttctcc |
337 |
Q |
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|||||||| |||||||| |
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| T |
33533179 |
caatccttcgcttctcc |
33533163 |
T |
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