View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_12 (Length: 296)
Name: NF18081_low_12
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 45083753 - 45083998
Alignment:
| Q |
21 |
aaatctgtcaaaactgcactgtgttttctgcaactgatagcaggataatcaaagttattcaatttactaatacttggtattctgcattctgcgagtgttc |
120 |
Q |
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| T |
45083753 |
aaatctgtcaaaactgcactgtgttttctgcaattgatagctggataatcaaagttattcaatttactaatacttggtattctgcattctgctagtgttc |
45083852 |
T |
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| Q |
121 |
ccaatatcacaactacagagatcacacgtataacctgcacaaaacaatagtgataaatctatgtacnnnnnnntaaaataaccgcaagttcttagacnnn |
220 |
Q |
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| T |
45083853 |
ccaatatcacaactacagagatcacacgtataacctgcacaaaacaatagtgataaatctatgtacaaaaaaataaaataaccgcaagttcttagacaaa |
45083952 |
T |
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| Q |
221 |
nnnnnncaacgaaaaccattgaaacagtggcataaaacaggtatat |
266 |
Q |
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| T |
45083953 |
aaaaaacaacgaaaaccattgaaacagtggcataaaacaggtatat |
45083998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 45079462 - 45079622
Alignment:
| Q |
21 |
aaatctgtcaaaactgcactgtgttttctgcaactgatagcaggataatcaaagttattcaatttactaatacttggtattctgcattctgcgagtgttc |
120 |
Q |
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|||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| || ||||||||| |||||||||||| |||| || |
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| T |
45079462 |
aaatctgttaaaactgcactgtgttttctgcaattgattgcaggataatcaaagttgttcaatttaatactacttggtactctgcattctgctagtgatc |
45079561 |
T |
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| Q |
121 |
ccaatatcacaactacagagatcacacgtataacctgcacaaaacaatagtgataaatcta |
181 |
Q |
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| T |
45079562 |
ccaatatcagaactacagatatcacaccaataacctgcacaaaacaatggttataagtcta |
45079622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 45076338 - 45076485
Alignment:
| Q |
21 |
aaatctgtcaaaactgcactgtgttttctgcaactgatagcaggataatcaaagttattcaatttactaatacttggtattctgcattctgcgagtgttc |
120 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||||||| | |||||||||| | || | |
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| T |
45076338 |
aaatctgtcaaaactgcactgtgttttctgcaattgatagctggataatcaaagttcttcaatttactactacttggttctttgcattctgctaatgaac |
45076437 |
T |
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| Q |
121 |
ccaatatcacaactacagagatcacacgtataacctgcacaaaacaat |
168 |
Q |
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| T |
45076438 |
caaatatcagaagtacagagatcacaccaataacctgcacaaaacaat |
45076485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 45068701 - 45068863
Alignment:
| Q |
21 |
aaatctgtcaaaactgcactgtgttttctgcaactgatagcaggataatcaaagttattcaatttactaatacttggtattctgcattctgcgagtgttc |
120 |
Q |
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|||||||| ||||||||| ||||||||| |||| |||| ||| | || |||||| | ||||||||| || |||||||| |||||||||||| |||| | |
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| T |
45068701 |
aaatctgttaaaactgcattgtgttttcggcaattgattgcatggtagtcaaagctgttcaatttaatactacttggttctctgcattctgctagtgata |
45068800 |
T |
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| Q |
121 |
ccaatatcacaactacagagatcacacgtataacctgcacaaaacaatagtgataaatctatg |
183 |
Q |
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||||||||| ||||| ||| ||||||| |||||||||| ||||||| ||| || |||||||| |
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| T |
45068801 |
ccaatatcaaaactatagaaatcacacaaataacctgcataaaacaacagtaattaatctatg |
45068863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 34506134 - 34506185
Alignment:
| Q |
21 |
aaatctgtcaaaactgcactgtgttttctgcaactgatagcaggataatcaa |
72 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| | ||||||| |
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| T |
34506134 |
aaatctgtcaaaactgcactgtgttttctgcaattgattgcaaggtaatcaa |
34506185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 34506189 - 34506254
Alignment:
| Q |
103 |
tgcattctgcgagtgttcccaatatcacaactacagagatcacacgtataacctgcacaaaacaat |
168 |
Q |
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|||||||||| |||| ||| ||||||| ||||| ||| ||||||| ||||||||||||||||||| |
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| T |
34506189 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaat |
34506254 |
T |
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