View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_13 (Length: 287)
Name: NF18081_low_13
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 48595887 - 48596141
Alignment:
| Q |
19 |
agtagtagagaaagagcatatgtttgacaaagtggtgacacctagtgacgtagggaaactgaatcgacttgtgattccaaagcaacacgcagagaagtac |
118 |
Q |
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| T |
48595887 |
agtagtagagaaagagcatatgtttgacaaagtggtgacacctagtgacgtagggaaactaaatcgacttgtgattccaaagcaacacgcagagaagtac |
48595986 |
T |
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| Q |
119 |
ttccctttggattcttctaccaacgagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagta |
218 |
Q |
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| T |
48595987 |
ttccctttggattcttctaccaacgagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagta |
48596086 |
T |
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| Q |
219 |
gccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaact |
273 |
Q |
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| T |
48596087 |
gccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaact |
48596141 |
T |
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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 8775157 - 8775027
Alignment:
| Q |
143 |
gagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccagagttatgtgatgacaaaag |
242 |
Q |
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| T |
8775157 |
gagaaaggtcttcttctgaattttgaagatagaaatggaaaattgtggagatttagatactcttattggaacagtagccaaagctatgttatgacaaaag |
8775058 |
T |
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| Q |
243 |
gttggagccgtttcgttaaggagaagaaact |
273 |
Q |
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| T |
8775057 |
gttggagccgttttgttaaagagaaaaaact |
8775027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 41952166 - 41952096
Alignment:
| Q |
200 |
tattcttattggaacagtagccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaa |
270 |
Q |
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|||||||||||||| ||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||| |
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| T |
41952166 |
tattcttattggaatagtagccagagttatgttttgaccaaaggatggagccggttcgttaaggagaagaa |
41952096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 22190360 - 22190432
Alignment:
| Q |
203 |
tcttattggaacagtagccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaactga |
275 |
Q |
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| T |
22190360 |
tcttattggaacagtagtcaaagttacgttctaacaaaaggatggagccggttcgttaaggagaagaatctga |
22190432 |
T |
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