View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_16 (Length: 257)
Name: NF18081_low_16
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 38629078 - 38629311
Alignment:
| Q |
16 |
cactttctggagctcattctattggtgtctcacgttgtccttctttctcaaaccgattatactctttcaattcaacttttcctcaagatcgttctatgga |
115 |
Q |
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| T |
38629078 |
cactttctggtgctcattctattggtgtctcacattgttcttcattctcaaaacgattatactctttcaatttaacttttcctcaagatccttctatgga |
38629177 |
T |
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| Q |
116 |
ccctaactttgctaggttgttaaaatctaagtgtccaccaccacagtcacagagcataaacccaactgtggtgcttgatggtagcacgcctaatgatttg |
215 |
Q |
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| T |
38629178 |
ccctaactttgctaggttgttaaaatctaagtgtccaccaccacagtcacagagcataaacccaactgtggtgcttgatggtagcacgcctaatgatttg |
38629277 |
T |
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| Q |
216 |
gacaacatgtactataagaggttgaagaataatc |
249 |
Q |
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| T |
38629278 |
gacaacatgtactataagaggttgaagaataatc |
38629311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 38697203 - 38697053
Alignment:
| Q |
16 |
cactttctggagctcattctattggtgtctcacgttgtccttctttctcaaaccgattatactctttcaattcaacttttcctcaagatcgttctatgga |
115 |
Q |
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|||||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
38697203 |
cactttctggtgctcattctattggtgtctcacattgttcttcattctcaaaacgattatactctttcaatgcaacttttcctcaagatccttctatgga |
38697104 |
T |
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| Q |
116 |
ccctaactttgctaggttgttaaaatctaagtgtccaccaccacagtcaca |
166 |
Q |
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| T |
38697103 |
ccctgactttgctaggttgttgagatccaagtgtccgccaccacagtcaca |
38697053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 38697008 - 38696951
Alignment:
| Q |
190 |
ttgatggtagcacgcctaatgatttggacaacatgtactataagaggttgaagaataa |
247 |
Q |
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| T |
38697008 |
ttgatggttccacgcctaatgatttggacaacatgtactataagaggttgaagaataa |
38696951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 20516595 - 20516639
Alignment:
| Q |
200 |
cacgcctaatgatttggacaacatgtactataagaggttgaagaa |
244 |
Q |
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| T |
20516595 |
cacgcctattgatttggacaacatgtactataagaggttgaagaa |
20516639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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