View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_18 (Length: 245)
Name: NF18081_low_18
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_18 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 50815010 - 50815243
Alignment:
| Q |
1 |
accaaattagttgttacattctgctccaatattatttatttatgtctttgtaactcatgatgcagactgtccccgtttatttacacggcatgtttcccaa |
100 |
Q |
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| T |
50815010 |
accaaattagttgttacattctgctccaatattatttatttatgtctttgtaactcatgatgcagactgtccccgtttatttacacggcatgtttcccaa |
50815109 |
T |
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| Q |
101 |
cttaacccaccttgagcttatattcaactttatgcccatattcgcctctttgaagtggaactgtctaatgaaacaactgcttccaaatttccccaagctt |
200 |
Q |
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| T |
50815110 |
cttaacccaccttgagcttatattcaactttatgcccatattcgcctctttgaagtggaactgtctaatgaaacaactgcttccaaatttccccaagctt |
50815209 |
T |
|
| Q |
201 |
caaactcttatcattcgtgaggtattgccccttt |
234 |
Q |
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| T |
50815210 |
caaactcttatcattcgtgaggtattgccccttt |
50815243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50860854 - 50860621
Alignment:
| Q |
1 |
accaaattagttgttacattctgctccaatattatttatttatgtctttgtaactcatgatgcagactgtccccgtttatttacacggcatgtttcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50860854 |
accaaattagttgttacattctgctccaatattatttatttatgtctttgtaactcatgatgcagactgtccccgtttatttacacggcatgtttcccaa |
50860755 |
T |
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| Q |
101 |
cttaacccaccttgagcttatattcaactttatgcccatattcgcctctttgaagtggaactgtctaatgaaacaactgcttccaaatttccccaagctt |
200 |
Q |
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| T |
50860754 |
cttaacccaccttgagcttatattcaactttatgcccatattcgcctctttgaagtggaactgtctaatgaaacaactgcttccaaatttccccaagctt |
50860655 |
T |
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| Q |
201 |
caaactcttatcattcgtgaggtattgccccttt |
234 |
Q |
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| T |
50860654 |
caaactcttatcattcgtgaggtattgccccttt |
50860621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 2504 - 2380
Alignment:
| Q |
88 |
gcatgtttcccaacttaacccaccttgagcttatattcaactttatgcccatattcgcctctttgaagtggaactgtctaatgaaacaactgcttccaaa |
187 |
Q |
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| T |
2504 |
gcatgtttcacaatttgacccaccttgagcttatattcaactttatgcattcatctggatcgttgaagtggagctggataatga---aactgcttgaaaa |
2408 |
T |
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| Q |
188 |
tttccccaagcttcaaactcttatcatt |
215 |
Q |
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| T |
2407 |
tttccccaaacttcaaactcttatcatt |
2380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 4050 - 3926
Alignment:
| Q |
88 |
gcatgtttcccaacttaacccaccttgagcttatattcaactttatgcccatattcgcctctttgaagtggaactgtctaatgaaacaactgcttccaaa |
187 |
Q |
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||||||||| ||| || ||||||||||||||||||||||||||||||| || | || |||||||||| ||| |||||| |||||||| ||| |
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| T |
4050 |
gcatgtttcacaatttgacccaccttgagcttatattcaactttatgcattcatctggatcgttgaagtggagctggataatga---aactgcttgaaaa |
3954 |
T |
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| Q |
188 |
tttccccaagcttcaaactcttatcatt |
215 |
Q |
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| T |
3953 |
tttccccaaacttcaaactcttatcatt |
3926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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