View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_19 (Length: 243)
Name: NF18081_low_19
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42634717 - 42634944
Alignment:
| Q |
1 |
ttaaatgccattctaaaattttgttaattttagtaatcaatatgcatgaaaactaaatagtgattgattctttaaatgagttataatacttacgtccagt |
100 |
Q |
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| T |
42634717 |
ttaaataccattctaaaattttgttaattttagtaatcaatatgcatgaaaactaaattgtgattgattctttaaatgagttataatacttacgtccagt |
42634816 |
T |
|
| Q |
101 |
ttcatgagtgaaatgtgcaaaagcagctgcgatttcgcgtttagagtcatctacagaaccagccctgccaaactgattataagaaccgagggcatcaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
42634817 |
ttcatgagtgaaatgtgcaaaagcagctgcgatttcgcgtttggagtcatctacagaaccaaccctaccaaactgattataagaaccgagggcatcaaga |
42634916 |
T |
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| Q |
201 |
aaagcagctcttgagtagaagttctttc |
228 |
Q |
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||| |||||||||| ||||||||||||| |
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| T |
42634917 |
aaaacagctcttgaatagaagttctttc |
42634944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 42639825 - 42639968
Alignment:
| Q |
85 |
aatacttacgtccagtttcatgagtgaaatgtgcaaaagcagctgcgatttcgcgtttagagtcatctacagaaccagccctgccaaactgattataaga |
184 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||| || | || ||||| |||||||| | ||| |||| ||| ||||||||||||||||| |
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| T |
42639825 |
aatacttacgtccagtttcatgtgtgaaatgagcaaaagcagcagcaacctcacgtttggagtcatccaaagatccagacctaccaaactgattataaga |
42639924 |
T |
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| Q |
185 |
accgagggcatcaagaaaagcagctcttgagtagaagttctttc |
228 |
Q |
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| T |
42639925 |
attgagggcatcgagaaaagcagctcttgtgtagaagttctttc |
42639968 |
T |
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