View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_2 (Length: 688)
Name: NF18081_low_2
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 664
Target Start/End: Complemental strand, 12813860 - 12813220
Alignment:
| Q |
19 |
tctataaagagggcgttttgtttttcaacacgttctaaccatgcactatatatgacctttgtcaaaattttcttagaagaaggagtgagagggttaatat |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813860 |
tctataaagggggcgttttgtttttcaacacgttctaaccatgcactatatatgacctttgtcaaaattttcttagaagaaggagtgagagggttaatat |
12813761 |
T |
|
| Q |
119 |
ttcatgacattgatccnnnnnnntattttatgtttagaagatagggttaaaatggaatgtnnnnnnntatatatgtggcggcagtcaattgtgtatttgt |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
12813760 |
ttcatgacattgatccaaaaaaatattttatgtttagaagatagggttaaaatggaatgtaaaaaaatatatatgtggcgg---tcaattgtgtatttgt |
12813664 |
T |
|
| Q |
219 |
tggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattggaatgtatgatcattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813663 |
tggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattggaatgtatgatcattc |
12813564 |
T |
|
| Q |
319 |
tcttactggtgttagaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttcnnnnnnnnncaattc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12813563 |
tcttactggtgttagaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttc--tttgtttcaattc |
12813466 |
T |
|
| Q |
419 |
aaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
518 |
Q |
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| T |
12813465 |
aaacagtgatagagatgatttatgggtttcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
12813366 |
T |
|
| Q |
519 |
tgtatcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacatag |
618 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12813365 |
tgtatcttttgaagctattcattttcttcaattcttctctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacatag |
12813266 |
T |
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| Q |
619 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatg |
664 |
Q |
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| T |
12813265 |
gatgacttttattttgaagggttgatgaactatgaagatgatgatg |
12813220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 419 - 668
Target Start/End: Complemental strand, 22418305 - 22418056
Alignment:
| Q |
419 |
aaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
518 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22418305 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
22418206 |
T |
|
| Q |
519 |
tgtatcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacatag |
618 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22418205 |
tgtatcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacatag |
22418106 |
T |
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| Q |
619 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgt |
668 |
Q |
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| T |
22418105 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgt |
22418056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 22418378 - 22418304
Alignment:
| Q |
205 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaa |
279 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22418378 |
aattgcgtatttgttggatcgtggtgtgtttcgtgggtggcttactagtgatggcctacaagaagagttgaggaa |
22418304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 30622111 - 30621994
Alignment:
| Q |
205 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattgga |
304 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
30622111 |
aattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgatggcccacaagaggagttgaggaagttggctcttcacgaggttattgga |
30622012 |
T |
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| Q |
305 |
atgtatgatcattctctt |
322 |
Q |
| |
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||||| |||||||||||| |
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| T |
30622011 |
atgtacgatcattctctt |
30621994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 14998449 - 14998348
Alignment:
| Q |
413 |
caattcaaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaag |
512 |
Q |
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||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || ||| || ||||| |||| ||||| |
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| T |
14998449 |
caattcaaacagtgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaag |
14998350 |
T |
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| Q |
513 |
aa |
514 |
Q |
| |
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|| |
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| T |
14998349 |
aa |
14998348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 663
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
613 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
663 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 48292638 - 48292701
Alignment:
| Q |
332 |
agaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactctt |
395 |
Q |
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||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||| |
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| T |
48292638 |
agaaagccacttttgctctcatctgtcaaaccctcaaacgtaactaatcaccattctcactctt |
48292701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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