View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18081_low_20 (Length: 243)

Name: NF18081_low_20
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18081_low_20
NF18081_low_20
[»] chr3 (10 HSPs)
chr3 (55-161)||(16094306-16094413)
chr3 (65-153)||(5177135-5177223)
chr3 (55-145)||(218782-218873)
chr3 (65-149)||(38415665-38415752)
chr3 (56-157)||(19814324-19814426)
chr3 (65-146)||(19814987-19815068)
chr3 (65-146)||(29565013-29565094)
chr3 (72-144)||(8257705-8257777)
chr3 (65-154)||(35937464-35937553)
chr3 (169-201)||(21790717-21790749)
[»] chr4 (16 HSPs)
chr4 (75-161)||(31854149-31854235)
chr4 (65-161)||(20628680-20628776)
chr4 (68-161)||(20635516-20635609)
chr4 (94-161)||(13501766-13501833)
chr4 (55-161)||(26546472-26546580)
chr4 (55-161)||(9415805-9415909)
chr4 (94-149)||(29094367-29094422)
chr4 (95-149)||(2941419-2941473)
chr4 (94-145)||(9415129-9415180)
chr4 (56-153)||(5290660-5290757)
chr4 (112-161)||(9614873-9614922)
chr4 (112-149)||(48130196-48130233)
chr4 (112-149)||(48989546-48989583)
chr4 (95-147)||(2321029-2321081)
chr4 (65-161)||(28876470-28876565)
chr4 (65-161)||(42332929-42333024)
[»] chr7 (17 HSPs)
chr7 (55-144)||(44832736-44832825)
chr7 (55-161)||(13072066-13072173)
chr7 (55-161)||(32073503-32073609)
chr7 (65-158)||(44832165-44832258)
chr7 (81-161)||(8722548-8722628)
chr7 (65-152)||(6350415-6350502)
chr7 (94-153)||(33387547-33387606)
chr7 (65-146)||(23581235-23581316)
chr7 (65-150)||(32198906-32198991)
chr7 (98-146)||(20609136-20609184)
chr7 (66-150)||(32199604-32199688)
chr7 (75-161)||(21420078-21420164)
chr7 (55-133)||(23090237-23090315)
chr7 (65-139)||(31251957-31252031)
chr7 (98-143)||(20611628-20611673)
chr7 (65-146)||(32073094-32073175)
chr7 (112-149)||(33685782-33685819)
[»] chr8 (12 HSPs)
chr8 (57-148)||(29352271-29352361)
chr8 (55-161)||(32750816-32750925)
chr8 (79-146)||(32540330-32540397)
chr8 (55-161)||(15862778-15862883)
chr8 (64-158)||(15863522-15863617)
chr8 (66-161)||(34135961-34136055)
chr8 (55-161)||(33947280-33947386)
chr8 (95-161)||(33947675-33947740)
chr8 (79-161)||(39282314-39282396)
chr8 (112-149)||(2729108-2729145)
chr8 (169-201)||(4418179-4418211)
chr8 (113-161)||(32539628-32539676)
[»] chr6 (6 HSPs)
chr6 (95-161)||(28932969-28933035)
chr6 (55-160)||(10232209-10232313)
chr6 (65-158)||(16793777-16793870)
chr6 (111-158)||(13541821-13541868)
chr6 (100-161)||(23217855-23217916)
chr6 (94-158)||(10231516-10231580)
[»] chr2 (14 HSPs)
chr2 (55-161)||(15512393-15512499)
chr2 (55-157)||(15441485-15441587)
chr2 (79-161)||(17372984-17373066)
chr2 (82-161)||(18829830-18829909)
chr2 (66-154)||(18829069-18829157)
chr2 (55-144)||(26591948-26592038)
chr2 (75-152)||(40654134-40654211)
chr2 (65-149)||(17373695-17373779)
chr2 (65-149)||(21556318-21556402)
chr2 (112-149)||(771217-771254)
chr2 (112-149)||(4555104-4555141)
chr2 (112-149)||(26238161-26238198)
chr2 (65-146)||(37621922-37622003)
chr2 (112-148)||(44084515-44084551)
[»] chr5 (8 HSPs)
chr5 (55-107)||(36716731-36716783)
chr5 (55-133)||(8788731-8788808)
chr5 (77-161)||(18265775-18265858)
chr5 (95-149)||(21548580-21548634)
chr5 (65-147)||(8788055-8788139)
chr5 (56-154)||(20362902-20362999)
chr5 (76-146)||(23236729-23236799)
chr5 (98-127)||(36716792-36716821)
[»] scaffold0495 (1 HSPs)
scaffold0495 (55-160)||(8931-9035)
[»] chr1 (5 HSPs)
chr1 (56-161)||(17745032-17745139)
chr1 (65-149)||(5715678-5715762)
chr1 (79-149)||(3829201-3829271)
chr1 (79-148)||(17744348-17744417)
chr1 (77-154)||(51775618-51775695)
[»] scaffold0134 (1 HSPs)
scaffold0134 (66-161)||(18222-18317)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-201)||(14379-14411)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 16094413 - 16094306
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgt-gttttttattttacagggtcatttttcagacttca 153  Q
    |||||||||||||||||||||| ||||||| ||||  | ||||||||||||||||  |||||||  |||||||||||||||||||| ||||||||||||     
T  16094413 ggacttcaactatattacagggcaaaaaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcagacttcg 16094314  T
Q  154 catatatt 161  Q
    ||||||||    
T  16094313 catatatt 16094306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 5177223 - 5177135
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttca 153  Q
    ||||||| | |||||||||| | || || ||||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||    
T  5177223 tatattaaatggtaaaaaattagaaaaatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttca 5177135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 218873 - 218782
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaa-taataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttc 145  Q
    ||||||||||||||||  | ||||||||| |||||| || | ||||||||||||||  |||||||||||||||||||||||| || ||||||    
T  218873 ggacttcaactatattttatggtaaaaaaataataagaatcccaaattacagggttataatatgtgttttttattttacaggatcgtttttc 218782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 38415665 - 38415752
Alignment:
Q  65 tatattacagggtaaaaaa-taataataaactcaaattacagggttgaaatatgtg--ttttttattttacagggtcatttttcagac 149  Q
    ||||||| ||||||||||| ||| || || |||||||||||||||| |||||||||  ||||||||||||||  ||||||||||||||    
T  38415665 tatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttcagac 38415752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 19814426 - 19814324
Alignment:
Q  56 gacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgtttttta-ttttacagggtcatttttcagacttcac 154  Q
    |||||||||||| ||||| ||| ||||||||||| ||  ||||||||||  |||  |||||||| |||||| ||||||||||| |||||||| |||| ||    
T  19814426 gacttcaactatgttacaaggtcaaaaataataagaatttcaaattacaaagttagaatatgtggtttttatttttacagggtaatttttcaaactttac 19814327  T
Q  155 ata 157  Q
    |||    
T  19814326 ata 19814324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 19814987 - 19815068
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||| ||||| |||||||| || || ||||||||||| ||||  |||||||| |||||| |||||| ||||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaatttacaaggtcatttttca 19815068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 29565013 - 29565094
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||| |||||||||||||| || ||  |||||||||| || |  ||||| |||||||||||||||| ||||||||||||    
T  29565013 tatattatagggtaaaaaataagaagaatatcaaattacaaggctataatatatgttttttattttacaaggtcatttttca 29565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 8257705 - 8257777
Alignment:
Q  72 cagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcattttt 144  Q
    |||||| | ||||||||| || ||  ||||||| |||  ||||||||||||||||||||||||||||||||||    
T  8257705 cagggtcataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttt 8257777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 35937553 - 35937464
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||| || || |||||||| || ||  |||||||||| | || |||||| | |||||||||||||||| ||||||||||||| ||||    
T  35937553 tatattatagagttaaaaataagaagaatatcaaattacaagattaaaatatatattttttattttacaggatcatttttcagacatcac 35937464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 21790717 - 21790749
Alignment:
Q  169 tatttgtattaaaatttgagggtaattttggaa 201  Q
    |||||||||| ||||||||||||||||||||||    
T  21790717 tatttgtattgaaatttgagggtaattttggaa 21790749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 31854149 - 31854235
Alignment:
Q  75 ggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||||| ||  |||||||||||| ||  ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31854149 ggtaaaaaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatatt 31854235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 20628776 - 20628680
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||||||||||||||| ||  |||||||||| ||||  ||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  20628776 tatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatatt 20628680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 20635609 - 20635516
Alignment:
Q  68 attacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    |||| ||||||||||||||| | ||  |||||||||| |||| ||||||||||||||||||||||||| |||||||| ||| |||| |||||||    
T  20635609 attatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttattttacaggttcatttttgagatttcatatatatt 20635516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 13501833 - 13501766
Alignment:
Q  94 ctcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||    
T  13501833 ctcaaattacaaggttgaaatatgtgttttttattttacaaggtaatttttcaaacttcgcatatatt 13501766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 26546580 - 26546472
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatg--tgttttttattttacagggtcatttttcagacttc 152  Q
    |||||||||||||||||||||||  |||||||||| || |||||||||||| |||  ||| ||  | ||||||||||||||| || | ||||||||||||    
T  26546580 ggacttcaactatattacagggtccaaaataataagaatctcaaattacagagttagaatgtgttttttttttattttacagagttaattttcagacttc 26546481  T
Q  153 acatatatt 161  Q
     ||||||||    
T  26546480 gcatatatt 26546472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 9415805 - 9415909
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    |||||||||||||| |||||||| ||||| ||| | || ||||||||||||||||  |||||||||| |||| ||||  |||| |||||||||||||| |    
T  9415805 ggacttcaactataatacagggtcaaaaagaatcagaatctcaaattacagggttataatatgtgttattta-tttagtgggt-atttttcagacttcgc 9415902  T
Q  155 atatatt 161  Q
    |||||||    
T  9415903 atatatt 9415909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 29094422 - 29094367
Alignment:
Q  94 ctcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||||||||||||||  ||||||| |||||||||||||||||| |||||||||||    
T  29094422 ctcaaattacagggttagaatatgtattttttattttacagggttatttttcagac 29094367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 2941419 - 2941473
Alignment:
Q  95 tcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  2941419 tcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagac 2941473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 9415180 - 9415129
Alignment:
Q  94 ctcaaattacagggttgaaatatgtgttttttattttacagggtcatttttc 145  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||||||||    
T  9415180 ctcaaattactgtgttaaaatatgtattttttattttacagggtcatttttc 9415129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 5290757 - 5290660
Alignment:
Q  56 gacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttca 153  Q
    |||||||  ||||||| | |||||||||||| || || ||||||||||| | || |||||||| |||||  ||||| || || |||||| ||||||||    
T  5290757 gacttcatgtatattatatggtaaaaaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttca 5290660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 9614873 - 9614922
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    |||||||||||||| |||||||  |||||||||||||||| || ||||||    
T  9614873 aatatgtgttttttgttttacaatgtcatttttcagactttacgtatatt 9614922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 48130233 - 48130196
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  48130233 aatatatgttttgtattttacagggtcatttttcagac 48130196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 48989583 - 48989546
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  48989583 aatatatgttttgtattttacagggtcatttttcagac 48989546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 2321081 - 2321029
Alignment:
Q  95 tcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcag 147  Q
    ||||||||||||| |  |||||||||||||  ||||| |||||||||||||||    
T  2321081 tcaaattacagggatataatatgtgtttttatttttatagggtcatttttcag 2321029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 28876565 - 28876470
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||| | ||||||||| || ||| ||||||| |||   ||||| |||| |||| || ||| ||||| |||||||||||||| ||||||    
T  28876565 tatattacagggttataaataataaaaatctcgaattacatggtcataatatatgttatttaatt-acaaggtcaattttcagacttcacgtatatt 28876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 42333024 - 42332929
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||| | ||||||||| ||  || ||||||| |||  |||||  |||| |||| || |||||| || |||||||||||||||||||||    
T  42333024 tatattacagggttataaataataaaaatttcgaattacatggtcaaaatacatgttatttaatt-acagggccaattttcagacttcacatatatt 42332929  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 44832736 - 44832825
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcattttt 144  Q
    ||||||||||||  ||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  44832736 ggacttcaactaatttacagggtcaaaaataataagaatctcaaattacagggttaaaatatgtgttttttcttttacatggtcattttt 44832825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 13072173 - 13072066
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttga-aatatgtgttttttattttacagggtcatttttcagacttca 153  Q
    ||||||||||||||||| ||||| ||||||||||| || |||| ||  | ||| | | ||||||||||||||||||||| |||||||||||||||||||     
T  13072173 ggacttcaactatattagagggttaaaaataataagaatctcagatcgcgggggttagaatatgtgttttttattttacggggtcatttttcagacttcg 13072074  T
Q  154 catatatt 161  Q
    ||||||||    
T  13072073 catatatt 13072066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 32073503 - 32073609
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||||||||||||| |||||  |||||||||| ||   ||||||||| | || ||||||||| | ||||||||||| | |||||||||||||||| |    
T  32073503 ggacttcaactatattagagggtgtaaaataataagaattgcaaattacatgattaaaatatgtgctatttattttacatgatcatttttcagacttcgc 32073602  T
Q  155 atatatt 161  Q
    |||||||    
T  32073603 atatatt 32073609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 44832258 - 44832165
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatat 158  Q
    ||||||| | |||||||||||| || || |||||||||||  ||| ||||||||  ||||||||||||| ||||||||||||||| ||| ||||    
T  44832258 tatattaaaaggtaaaaaataagaagaatctcaaattacaaagttaaaatatgtactttttattttacatggtcatttttcagacatcatatat 44832165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 8722628 - 8722548
Alignment:
Q  81 aaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||| || ||| |||||||||||   ||||| ||||||||||||||||  ||||||| |||||||| |||||||||    
T  8722628 aaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatatt 8722548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 6350502 - 6350415
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttc 152  Q
    ||||||| ||||| | ||||||||| || ||||||||||| | ||  ||||||||||||| |||||| || |||||| ||||||||||    
T  6350502 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 6350415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 33387547 - 33387606
Alignment:
Q  94 ctcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttca 153  Q
    ||||||||||||||||  |||||||||||||||||||| ||| ||||| || ||||||||    
T  33387547 ctcaaattacagggttataatatgtgttttttattttataggatcattgtttagacttca 33387606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 23581316 - 23581235
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||| ||||| |||| ||| || |  ||||||||||||||||  ||||||| ||||| |||||||| ||||||||||||    
T  23581316 tatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaattttacaaggtcatttttca 23581235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 32198991 - 32198906
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagact 150  Q
    ||||||| ||||  |||||||| || || ||||||||| ||||||  |||||||||||||  ||||||| | ||||||||||||||    
T  32198991 tatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaagatcatttttcagact 32198906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 20609184 - 20609136
Alignment:
Q  98 aattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||||||||  ||||| | |||||||||||||||||||||||||||    
T  20609184 aattacagggttagaatatctattttttattttacagggtcatttttca 20609136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 32199604 - 32199688
Alignment:
Q  66 atattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagact 150  Q
    |||||| |||||||||||||| |||||  |||||||||| |||| |||||| | |||||  ||||||| | |||||||| |||||    
T  32199604 atattagagggtaaaaaataagaataatatcaaattacaaggttaaaatatttatttttctttttacaagatcattttttagact 32199688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 21420164 - 21420078
Alignment:
Q  75 ggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    |||||||||||  || ||  |||||||||||||||  ||| | |||||||| ||||| ||  |||||||||||||||||| ||||||    
T  21420164 ggtaaaaaatagaaagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatatt 21420078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 23090237 - 23090315
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttaca 133  Q
    |||||| |||||||||| |||||  |||||||||| ||  | |||||||| | ||  ||||||||||||||||||||||    
T  23090237 ggactttaactatattaaagggtcgaaaataataaaaatattaaattacaagattataatatgtgttttttattttaca 23090315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 31252031 - 31251957
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtca 139  Q
    ||||||||| ||| ||| ||||||| ||  ||||| || | ||||  ||||||||||||||||||||||||||||    
T  31252031 tatattacaaggttaaagataataagaatatcaaaatatatggttagaatatgtgttttttattttacagggtca 31251957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 20611673 - 20611628
Alignment:
Q  98 aattacagggttgaaatatgtgttttttattttacagggtcatttt 143  Q
    ||||||||||||  ||||| | ||||||||||||||||||||||||    
T  20611673 aattacagggttagaatatctattttttattttacagggtcatttt 20611628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 32073175 - 32073094
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||||| ||| |||||||| || || ||||| ||| || |||  |||||||  ||||||||||||| ||||||||||||    
T  32073175 tatattacaaggtcaaaaataagaagaatctcaatttagagagttagaatatgtaatttttattttacacggtcatttttca 32073094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 33685819 - 33685782
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  33685819 aatatatgttttgtattttacagggtcatttttcagac 33685782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 29352271 - 29352361
Alignment:
Q  57 acttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcaga 148  Q
    ||||||||||||||||||| ||||||||||||| |  ||||||||||||||||   |||||||||||||||||||| |||||||||||||||    
T  29352271 acttcaactatattacaggataaaaaataataaaagtctcaaattacagggttaggatatgtgttttttattttac-gggtcatttttcaga 29352361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 32750816 - 32750925
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaa-taataataaactcaaattacagggttgaaatatgtgttttttattt--tacagggtcatttttcagactt 151  Q
    ||||||||| ||||||| ||| ||||||| || ||| || |||| |||||||||||  |||||||||||||| |||  |||| |||||||||||| ||||    
T  32750816 ggacttcaaatatattaaaggataaaaaaatattaagaatctcagattacagggttagaatatgtgtttttttttttgtacaaggtcatttttcaaactt 32750915  T
Q  152 cacatatatt 161  Q
    | ||||||||    
T  32750916 cgcatatatt 32750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 32540330 - 32540397
Alignment:
Q  79 aaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    |||||||| |||||  |||||||||| || | |||||| |||||||||||||||||| ||||||||||    
T  32540330 aaaaataagaataatatcaaattacaaggctaaaatatatgttttttattttacaggatcatttttca 32540397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 15862883 - 15862778
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    |||||||||||||||||||  || ||||||||||| || |||||||||||   || |||||| |  ||||||||||||| | |||||||| | |||| ||    
T  15862883 ggacttcaactatattacaaagtcaaaaataataagaatctcaaattacaatattaaaatatatactttttattttacaagatcattttt-aaacttaac 15862785  T
Q  155 atatatt 161  Q
    |||||||    
T  15862784 atatatt 15862778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 15863522 - 15863617
Alignment:
Q  64 ctatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgtttt-ttattttacagggtcatttttcagacttcacatat 158  Q
    |||||||| ||||| |||||||| ||  | ||||||||||| | ||| ||||||| |||| ||||||||||  |||||||||||||| || |||||    
T  15863522 ctatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtatttttttattttacaatgtcatttttcagacatcgcatat 15863617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 34136055 - 34135961
Alignment:
Q  66 atattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    |||||||||||| | ||||||||| ||  || ||||||| |||  |||||  |||| |||| || ||||||||| |||||||||||||||||||||    
T  34136055 atattacagggttataaataataaaaatttcgaattacatggtcaaaatacatgttatttaatt-acagggtcaattttcagacttcacatatatt 34135961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 33947386 - 33947280
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||||  ||||||| ||||| ||| |||  || || ||||||||||| |||| ||||| ||| ||||  || ||||| ||||||||||||||||| |    
T  33947386 ggacttcacatatattatagggtcaaacatatgaagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcagacttcgc 33947287  T
Q  155 atatatt 161  Q
     ||||||    
T  33947286 ctatatt 33947280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 33947675 - 33947740
Alignment:
Q  95 tcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||||| |||||| |||||||  ||||||| ||||| ||||||||||| || ||||||    
T  33947675 tcaaattacagggttaaaatatatgtttttatttttacatggtca-ttttcagactttacgtatatt 33947740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 39282396 - 39282314
Alignment:
Q  79 aaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||||  |||||||||| | ||  ||||||  |||||||||||||| ||||| |||| | ||||||| ||||||    
T  39282396 aaaaataataataacatcaaattacaagattagaatatgcattttttattttacaaggtcaatttttaaacttcacgtatatt 39282314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 2729108 - 2729145
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  2729108 aatatatgttttgtattttacagggtcatttttcagac 2729145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 4418211 - 4418179
Alignment:
Q  169 tatttgtattaaaatttgagggtaattttggaa 201  Q
    |||||||||||||| ||||||||||||||||||    
T  4418211 tatttgtattaaaagttgagggtaattttggaa 4418179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 32539676 - 32539628
Alignment:
Q  113 atatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||||||||||| |||| ||||||| | |||| |||||||    
T  32539676 atatgtgttttttattttacatggtcttttttcaaatttcatatatatt 32539628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 28932969 - 28933035
Alignment:
Q  95 tcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  28932969 tcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatt 28933035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 10232209 - 10232313
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||||||||||||||| | ||||||||||||| ||  ||||||||||| |||  |||||||| ||| || |||||| |||||||||||||||||| |    
T  10232209 ggacttcaactatattacaagataaaaaataataagaatatcaaattacagagttagaatatgtgctttcta-tttacaaggtcatttttcagacttcgc 10232307  T
Q  155 atatat 160  Q
    ||||||    
T  10232308 atatat 10232313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 16793870 - 16793777
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatat 158  Q
    ||||||||| ||||||||||||||| |  ||| ||||| ||  ||  |||||||| |||||||||||||| || |||||||||||||| |||||    
T  16793870 tatattacaaggtaaaaaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagtaatttttcagacttcgcatat 16793777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 13541821 - 13541868
Alignment:
Q  111 aaatatgtgttttttattttacagggtcatttttcagacttcacatat 158  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||||||    
T  13541821 aaatatgtgttttttattttacaaggtcattttttagacatcacatat 13541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 23217855 - 23217916
Alignment:
Q  100 ttacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||  |||||||||||| ||||||||  ||||||||||||||| |||| ||||||    
T  23217855 ttacagggttagaatatgtgttttatattttactaggtcatttttcagacatcacttatatt 23217916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 10231580 - 10231516
Alignment:
Q  94 ctcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatat 158  Q
    ||||||||||| |||  |||| | | |||||||||||||||||||| ||||||||| || |||||    
T  10231580 ctcaaattacaaggtaaaaatgtctattttttattttacagggtcacttttcagacatcgcatat 10231516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 15512393 - 15512499
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    |||||||||||||||||||| | |||||||||||| || |||||||||||| |||  ||||| ||||||||||||| |||  |||||||||||| ||||     
T  15512393 ggacttcaactatattacagagaaaaaaataataaaaatctcaaattacagagttagaatatatgttttttatttttcagcatcatttttcagatttcat 15512492  T
Q  155 atatatt 161  Q
    |||||||    
T  15512493 atatatt 15512499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 15441587 - 15441485
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||||||||||||||| ||| ||||||||||| ||  ||||||||||| |||  ||||| || ||||||||||| ||||| |||||||||||||| |    
T  15441587 ggacttcaactatattacatggtgaaaaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttcagacttcgc 15441488  T
Q  155 ata 157  Q
    |||    
T  15441487 ata 15441485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 17373066 - 17372984
Alignment:
Q  79 aaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||| ||  | |||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  17373066 aaaaataataagaatataaaattagagggttaaaatatgtgttttttattttacatggtcatttttcagaattcacatatatt 17372984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 18829830 - 18829909
Alignment:
Q  82 aataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    |||||||| || ||||||||||||||||  |||||||| |||||||||||||  |||||||||||||||| |||||||||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatatt 18829909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 18829157 - 18829069
Alignment:
Q  66 atattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    |||||| ||||| ||||||||||| || |||||||||   ||||  ||||||| |||||||||||||||| ||||||||||||| ||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagacatcac 18829069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 26591948 - 26592038
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaa-taataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcattttt 144  Q
    ||||||||||||||||||| ||||||||| | |||| || |||||||||||| ||   |||||||| |||||||||||||  |||||||||    
T  26591948 ggacttcaactatattacaaggtaaaaaaatgataagaatctcaaattacagagtaagaatatgtgatttttattttacatagtcattttt 26592038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 40654134 - 40654211
Alignment:
Q  75 ggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttc 152  Q
    |||||||||||||||  | ||||||||| ||||||  |||||||| |||||| ||||||| || ||||||||||||||    
T  40654134 ggtaaaaaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttc 40654211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 17373695 - 17373779
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||||| | ||| |||||||  || || |||||||||||| |||  ||||| | |||||||||||||| |||||||||||||||    
T  17373695 tatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtcatttttcagac 17373779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 21556402 - 21556318
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||||| ||||| |||||| | || || |||||||||||  |||  ||||||| | |||||||||||| |||||||||||||||    
T  21556402 tatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagac 21556318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 771254 - 771217
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  771254 aatatatgttttgtattttacagggtcatttttcagac 771217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 4555104 - 4555141
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  4555104 aatatatgttttgtattttacagggtcatttttcagac 4555141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 26238198 - 26238161
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26238198 aatatatgttttgtattttacagggtcatttttcagac 26238161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 37621922 - 37622003
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||| ||||| |||| ||| || || ||||||||||| |||| |||||| | |||||||||||| | | ||||||||||    
T  37621922 tatattatagggtcaaaagtaagaagaatctcaaattacatggttaaaatatctattttttattttataagatcatttttca 37622003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 44084515 - 44084551
Alignment:
Q  112 aatatgtgttttttattttacagggtcatttttcaga 148  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  44084515 aatatatgttttgtattttacagggtcatttttcaga 44084551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 36716731 - 36716783
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacaggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36716731 ggacttcaactatattacagggtaaaaaataataataaactcaaattacaggg 36716783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 8788731 - 8788808
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttaca 133  Q
    |||||| |||||||||| || |||||||||||||| || ||||||||||| || | ||||||||| |||||||||||||    
T  8788731 ggactttaactatattatagagtaaaaaataataagaatctcaaattacatggctaaaatatgtg-tttttattttaca 8788808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 18265858 - 18265775
Alignment:
Q  77 taaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    ||||||||||||| ||  |||||||||||| || |||||||| |||||||| ||||| ||| | |||||||| ||||||||||||    
T  18265858 taaaaaataataagaatttcaaattacagg-ttaaaatatgttttttttatattacatggttacttttcagatttcacatatatt 18265775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 21548580 - 21548634
Alignment:
Q  95 tcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||||||||| |||  ||||| | ||||||||||||||||||||||||||||||    
T  21548580 tcaaattacagagttataatatctattttttattttacagggtcatttttcagac 21548634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 8788139 - 8788055
Alignment:
Q  65 tatattacagggtaaaaaataataataaa--ctcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcag 147  Q
    ||||||| ||||| |||||||| || |||  |||||||||||  |||  ||||| |||||||||||||||||||| |||||||||    
T  8788139 tatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacagggttatttttcag 8788055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 20362999 - 20362902
Alignment:
Q  56 gacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    |||||||  ||||||| | ||| |||||||| || || ||||||||||| |||| |||||||| |||| | ||||| ||||| |||||| |||||||||    
T  20362999 gacttcatgtatattatatggtcaaaaataagaagaatctcaaattacaaggttaaaatatgtcttttat-ttttatagggttattttttagacttcac 20362902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 23236729 - 23236799
Alignment:
Q  76 gtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttca 146  Q
    ||||||||||| |||||  |||||||||| || |  ||||| ||| |||||||| ||||||||||||||||    
T  23236729 gtaaaaaataagaataatttcaaattacaaggctagaatatatgtgttttatttcacagggtcatttttca 23236799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 36716792 - 36716821
Alignment:
Q  98 aattacagggttgaaatatgtgttttttat 127  Q
    ||||||||||||||||||||||||||||||    
T  36716792 aattacagggttgaaatatgtgttttttat 36716821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 8931 - 9035
Alignment:
Q  55 ggacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||||||||||||||| | ||||||||||||| ||  ||||||||||| |||  |||||||| ||| || |||||| |||||||||||||||||| |    
T  8931 ggacttcaactatattacaagataaaaaataataagaatatcaaattacagagttagaatatgtgctttcta-tttacaaggtcatttttcagacttcgc 9029  T
Q  155 atatat 160  Q
    ||||||    
T  9030 atatat 9035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 17745032 - 17745139
Alignment:
Q  56 gacttcaactatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgtt--ttttattttacagggtcatttttcagacttca 153  Q
    |||||||||||||||||| ||| ||||||||||| || |||||||| || ||||  ||||||| ||  |||||||||||||| ||||||||||||||||     
T  17745032 gacttcaactatattacacggtcaaaaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcg 17745131  T
Q  154 catatatt 161  Q
     |||||||    
T  17745132 aatatatt 17745139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 5715678 - 5715762
Alignment:
Q  65 tatattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    ||||||| | ||| |||||||| |||||  |||||||||| |||| |||||| | |||||||||||||| | |||||||| ||||    
T  5715678 tatattataaggtcaaaaataagaataatatcaaattacaaggttaaaatatctattttttattttacatgatcattttttagac 5715762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 3829271 - 3829201
Alignment:
Q  79 aaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagac 149  Q
    |||||||| || ||| |||| |||||  |||  ||||| |||||| |||||||||||||||||||||||||    
T  3829271 aaaaataagaagaaattcaagttacaaagttagaatatatgttttgtattttacagggtcatttttcagac 3829201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 17744417 - 17744348
Alignment:
Q  79 aaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcaga 148  Q
    |||||||| ||||| ||||||||||| | || |||||| | ||||||||| |||| | ||||||||||||    
T  17744417 aaaaataagaataatctcaaattacaagattaaaatatctattttttattgtacatgatcatttttcaga 17744348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 51775695 - 51775618
Alignment:
Q  77 taaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcac 154  Q
    ||||||||||||| || ||||||||  ||||||  ||| ||| |||||||||||||| |||| ||||| | |||||||    
T  51775695 taaaaaataataaaaatctcaaattggagggttagaatttgtattttttattttacatggtctttttttaaacttcac 51775618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 18222 - 18317
Alignment:
Q  66 atattacagggtaaaaaataataataaactcaaattacagggttgaaatatgtgttttttattttacagggtcatttttcagacttcacatatatt 161  Q
    |||||||||||| | ||||||||| || || || ||||||| ||  ||||||| |||| |||||||| ||||||||| ||| ||||| | ||||||    
T  18222 atattacagggtcataaataataagaatcttaacttacaggattataatatgttttttatattttactgggtcatttgtcatacttcgcttatatt 18317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 14411 - 14379
Alignment:
Q  169 tatttgtattaaaatttgagggtaattttggaa 201  Q
    |||||||||||||| ||||||||||||||||||    
T  14411 tatttgtattaaaagttgagggtaattttggaa 14379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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