View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18081_low_23 (Length: 207)
Name: NF18081_low_23
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 50814781 - 50814640
Alignment:
| Q |
24 |
ccaagaatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814781 |
ccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
50814682 |
T |
|
| Q |
124 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814681 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatg |
50814640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 50861083 - 50861224
Alignment:
| Q |
24 |
ccaagaatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861083 |
ccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
50861182 |
T |
|
| Q |
124 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861183 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatg |
50861224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 50814500 - 50814370
Alignment:
| Q |
32 |
atgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcag |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
50814500 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaa |
50814401 |
T |
|
| Q |
132 |
ggttttggtagttaggatgaaagaaggcagt |
162 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |
|
|
| T |
50814400 |
ggttttgctagttagaatgaaagaaggcagt |
50814370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 50861364 - 50861494
Alignment:
| Q |
32 |
atgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcag |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
50861364 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaa |
50861463 |
T |
|
| Q |
132 |
ggttttggtagttaggatgaaagaaggcagt |
162 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |
|
|
| T |
50861464 |
ggttttgctagttagaatgaaagaaggcagt |
50861494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 39558896 - 39558767
Alignment:
| Q |
36 |
gaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggtt |
135 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
39558896 |
gaaaccgacagattctaagtgaaggacttttagcaagggaagattaacgaaaggaacttcgttcaatgttacactcttcaatttgaggactgtcaaggtt |
39558797 |
T |
|
| Q |
136 |
ttggtagttaggatgaaagaaggcagtatg |
165 |
Q |
| |
|
||||||||||| | |||| |||||||||| |
|
|
| T |
39558796 |
ttggtagttagaaccaaagcaggcagtatg |
39558767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 39559169 - 39559033
Alignment:
| Q |
27 |
agaatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggt---tcaatgttatcctcttcaatttgagt |
123 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
39559169 |
agaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgagg |
39559070 |
T |
|
| Q |
124 |
tgggtcagggttttggtagttaggatgaaagaaggca |
160 |
Q |
| |
|
||||| ||||||| ||||||| | |||||||||| |
|
|
| T |
39559069 |
acggtcaaggttttgttagttagaactaaagaaggca |
39559033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 49857492 - 49857588
Alignment:
| Q |
29 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaact---tggttcaatgttatcctcttcaatttgag |
122 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||| ||| ||| | ||||||||||| |||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
49857492 |
aatatgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgag |
49857588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 49760642 - 49760735
Alignment:
| Q |
29 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgag |
122 |
Q |
| |
|
|||||||| || ||||| ||| ||||||||| |||| ||| | |||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
49760642 |
aatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaactccagtcaatgttatcctcttcaatttgag |
49760735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 19370925 - 19371002
Alignment:
| Q |
45 |
agattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgag |
122 |
Q |
| |
|
|||||| | |||||| ||||| ||| |||||||||||||| | ||||||||| | ||||||||||||||||||||| |
|
|
| T |
19370925 |
agattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgag |
19371002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University