View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_5 (Length: 465)
Name: NF18081_low_5
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 189 - 448
Target Start/End: Complemental strand, 42274602 - 42274342
Alignment:
| Q |
189 |
gtatgaaaaacacattctttctagtaagagaactttnnnnnnnnnnnn-tcaataatgctaagtactagcccttgtttgaaggtcaaccaaaatgtgtat |
287 |
Q |
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| T |
42274602 |
gtatgaaaaacacattctttctagtaagagaactttaaaaaaagaaaaatcaataatgctaagtactagcccttgtttgaaggtcaactaaaatgtgtat |
42274503 |
T |
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| Q |
288 |
actcgtgtaaccaggcattacatcaagacaataaataaatagttacattcaggataatatatgatttattgacgagatcttataatttccaagatgatag |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42274502 |
actcgtgtaaccaggcattacatcaagacaataaataaatagttacattcaggataatatatgatttattgacgagatcttataatttccaagattatag |
42274403 |
T |
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| Q |
388 |
tacatacaaccacattctatttttggcataagtcatatgcatgtgttattaatcatctata |
448 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42274402 |
tacatacaaccacatactatttttggcataagtcatatgcatgtgttattaatcacctata |
42274342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 42274778 - 42274660
Alignment:
| Q |
13 |
cattagttaatgtcaaatttttacatcatccaacaattgtgactgttaataatttgtttgtaattggagagctaaattggtaaaatgtgcatcttttgtc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42274778 |
cattagttaatgtcaaatttttacatcatccaacaattgtgactgttaataatttgtttgtaattggagagctaaattggtaaaatgtgcatcttttgtc |
42274679 |
T |
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| Q |
113 |
tatatccctgagagaaaca |
131 |
Q |
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|||||| |||||||||||| |
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| T |
42274678 |
tatatcactgagagaaaca |
42274660 |
T |
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