View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18081_low_6 (Length: 396)
Name: NF18081_low_6
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18081_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 211 - 378
Target Start/End: Original strand, 38831803 - 38831962
Alignment:
| Q |
211 |
gagaacttacatgctagctagtagctagggtaggaatgtttttgatttattgcactcaattaaggtttagttttcttgtgaaagagatggaacttttgct |
310 |
Q |
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| T |
38831803 |
gagaacttacatgctagctagtagctagggtaggaatgtttttg--------cactcaattaaggtttagttttcttgtgaaagagatggaacttttgct |
38831894 |
T |
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| Q |
311 |
ctccttaatggactttgaaaatggtaatgttgcctttttaggaagcggcaagggagtgtttggaagaa |
378 |
Q |
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| T |
38831895 |
ctccttaatggactttgaaaatggtaatgttgcctttttaggaagcggcaagggagtgtttggaagaa |
38831962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 38831594 - 38831713
Alignment:
| Q |
1 |
tatgctactcaatggtgccactgctagcatgataatcctatttggctagtttcttgattaatttccacacactataaacacaaaaaataatagatcaaca |
100 |
Q |
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| T |
38831594 |
tatgctactcaatggtgccactgctagcatgataatcctatttggctagtttcttgattaatttccacacactataaacacaaaaaataatagatcaaca |
38831693 |
T |
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| Q |
101 |
accttagaatataattctaa |
120 |
Q |
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| T |
38831694 |
accttagaatataattctaa |
38831713 |
T |
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