View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18081_low_7 (Length: 390)

Name: NF18081_low_7
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18081_low_7
NF18081_low_7
[»] chr7 (3 HSPs)
chr7 (286-381)||(33816945-33817041)
chr7 (20-96)||(33816672-33816752)
chr7 (162-223)||(33816818-33816879)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 286 - 381
Target Start/End: Original strand, 33816945 - 33817041
Alignment:
Q  286 aaaatgatgcattgataaggtataagcaacccatcatttttagaaaaatagttggttcggtcaacaacaaagaatgcgatg-tttactaagaataat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33816945 aaaatgatgcattgataaggtataagcaacccatcatttttagaaaaatagttggttcggtcaacaacaaagaatgcgatgttttactaagaataat 33817041  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 33816672 - 33816752
Alignment:
Q  20 attaccaatgtcgtaatttcatatatatgcggtcaaaataataaatatgtagctat----gtgtgatagtttttaagaagt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  33816672 attaccaatgtcgtaatttcatatatatgcggtcaaaataataaatatgtagctatgtacgtgtgatagtttttaagaagt 33816752  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 33816818 - 33816879
Alignment:
Q  162 ttgttcttatatcttgttcctagtacaaaaacatgtacttttgaaactcaagttgttcaatc 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  33816818 ttgttcttatatcttgttcctagtacaaaaacatgcacttttgaaagtcaagttgttcaatc 33816879  T

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