View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18081_low_8 (Length: 380)

Name: NF18081_low_8
Description: NF18081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18081_low_8
NF18081_low_8
[»] chr8 (1 HSPs)
chr8 (36-364)||(36115724-36116069)
[»] chr7 (2 HSPs)
chr7 (36-364)||(8291357-8291702)
chr7 (25-87)||(5356702-5356764)
[»] chr1 (2 HSPs)
chr1 (36-364)||(50442156-50442501)
chr1 (26-364)||(2351667-2352021)
[»] chr5 (1 HSPs)
chr5 (25-61)||(14083996-14084032)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 36116069 - 36115724
Alignment:
Q  36 tcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcagattggacgggttc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36116069 tcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcggattggacgggttc 36115970  T
Q  136 gggttacacgg----------------atcggttactgcgggtaagcacttagacaccaacaaaaattgttttcacgtccagaaaaaaccaaaatcaaat 219  Q
    |||||||||||                ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36115969 gggttacacgggttgcgggttgcacggatcggttactgcgggtaagtactcagacaccaacaaaaattgttttcacctccagaaaaaaccaaaatcaaat 36115870  T
Q  220 caactatctcatatatagatctatatcatcaagcttcaaccaataacaaaaaaacagaag-nnnnnnnnnnnngagctttgagaagaagaataagaagaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||||||    
T  36115869 caactatctcatatatagatctatatcatcaagcttcaaccaacaacaaaaaaacagaagaaaaaaaaaacatgagctttgagaagaagaataagaagaa 36115770  T
Q  319 ggggcggttcttgcatggttgttctacacaaaggaaacgaagaaag 364  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  36115769 ggggcggttcttgcatggttgttctacacagaggaaacgaagaaag 36115724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 364
Target Start/End: Original strand, 8291357 - 8291702
Alignment:
Q  36 tcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcagattggacgggttc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8291357 tcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcggattggacgggttc 8291456  T
Q  136 gggttacacg----------------gatcggttactgcgggtaagcacttagacaccaacaaaaattgttttcacgtccagaaaaaaccaaaatcaaat 219  Q
    ||||||||||                |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8291457 gggttacacgggttgcgggttgcacggatcggttactgcgggtaagtactcagacaccaacaaaaattgttttcacctccagaaaaaaccaaaatcaaat 8291556  T
Q  220 caactatctcatatatagatctatatcatcaagcttcaaccaataacaaaaaaacagaag-nnnnnnnnnnnngagctttgagaagaagaataagaagaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||||||    
T  8291557 caactatctcatatatagatctatatcatcaagcttcaaccaacaacaaaaaaacagaagaaaaaaaaaacatgagctttgagaagaagaataagaagaa 8291656  T
Q  319 ggggcggttcttgcatggttgttctacacaaaggaaacgaagaaag 364  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  8291657 ggggcggttcttgcatggttgttctacacagaggaaacgaagaaag 8291702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 5356702 - 5356764
Alignment:
Q  25 aggggtggacatcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctca 87  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  5356702 aggggtggacatcaggcgggttcgggcccaaaaccccactccgatccaacccgtcggttctca 5356764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 50442501 - 50442156
Alignment:
Q  36 tcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcagattggacgggttc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50442501 tcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcggattggacgggttc 50442402  T
Q  136 gggttacacgg----------------atcggttactgcgggtaagcacttagacaccaacaaaaattgttttcacgtccagaaaaaaccaaaatcaaat 219  Q
    |||||||||||                ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50442401 gggttacacgggttgcgggttgcacggatcggttactgcgggtaagtactcagacaccaacaaaaattgttttcacctccagaaaaaaccaaaatcaaat 50442302  T
Q  220 caactatctcatatatagatctatatcatcaagcttcaaccaataacaaaaaaacagaag-nnnnnnnnnnnngagctttgagaagaagaataagaagaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||||||    
T  50442301 caactatctcatatatagatctatatcatcaagcttcaaccaacaacaaaaaaacagaagaaaaaaaaaacatgagctttgagaagaagaataagaagaa 50442202  T
Q  319 ggggcggttcttgcatggttgttctacacaaaggaaacgaagaaag 364  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  50442201 ggggcggttcttgcatggttgttctacacagaggaaacgaagaaag 50442156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 26 - 364
Target Start/End: Original strand, 2351667 - 2352021
Alignment:
Q  26 ggggtggacatcgggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggc------ccatctttgtccatttacagctt 119  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||| |      |||||||||| ||||||||||||    
T  2351667 ggggtggacatcgggcgggttcgggcccaaaaccccactctgatccaacccgtcggttctcatgtatagtcatagatccatctttgttcatttacagctt 2351766  T
Q  120 cagattggacgggttcgg----------------gttacacggatcggttactgcgggtaagcacttagacaccaacaaaaattgttttcacgtccagaa 203  Q
    | ||||||||||||||||                |||||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  2351767 cggattggacgggttcggattacacgggttgtgggttacacggatcggttactgcgggtaagaactcagacacagacaaaaattgttttcacgtccagaa 2351866  T
Q  204 aaaaccaaaatcaaatcaactatctcatatatagatctatatcatcaagcttcaaccaataacaaaaaaacagaagnnnnnnnnnnnngagctttgagaa 303  Q
    |||| | |||    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||            ||||||||||||    
T  2351867 aaaaaccaaa----atcaattatctcatatatagatctatatcatcaagcttcaaccaacaacaaaaaaacagaag--aaaaaaatatgagctttgagaa 2351960  T
Q  304 gaagaataagaagaaggggcggttcttgcatggttgttctacacaaaggaaacgaagaaag 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2351961 gaagaataagaagaaggggcggttcttgcatggttgttctacacagaggaaacgaagaaag 2352021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 14083996 - 14084032
Alignment:
Q  25 aggggtggacatcgggcgggttcgggcctaaaacccc 61  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  14083996 aggggtggacatcgggcgggttcgggcccaaaccccc 14084032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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