View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18082_high_1 (Length: 1107)

Name: NF18082_high_1
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18082_high_1
NF18082_high_1
[»] chr4 (4 HSPs)
chr4 (229-1091)||(20362032-20362896)
chr4 (162-252)||(20362967-20363057)
chr4 (9-59)||(20363243-20363293)
chr4 (52-92)||(20363127-20363167)
[»] chr8 (3 HSPs)
chr8 (312-939)||(21549882-21550529)
chr8 (1049-1091)||(21549840-21549882)
chr8 (260-298)||(21550520-21550558)
[»] chr6 (3 HSPs)
chr6 (260-486)||(32194831-32195061)
chr6 (499-557)||(32194775-32194838)
chr6 (588-634)||(32194702-32194748)
[»] chr7 (2 HSPs)
chr7 (261-364)||(24364262-24364364)
chr7 (276-321)||(35674579-35674624)
[»] chr3 (2 HSPs)
chr3 (164-225)||(44314026-44314087)
chr3 (681-718)||(44313741-44313778)


Alignment Details
Target: chr4 (Bit Score: 722; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 229 - 1091
Target Start/End: Complemental strand, 20362896 - 20362032
Alignment:
Q  229 agaaaagtgaggtaaaatttgcatattatgtaatggtggaaatgcaggaaaaacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatt 328  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20362896 agaaaagtgaggtaaaaattgcatattatgtaatggtggaaatgcaggaaaaacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatt 20362797  T
Q  329 tctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttcccagcttaacagtgcccctt 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20362796 tctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttcccagcttaacagtgcccctt 20362697  T
Q  429 gaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatttaccaccagcaag-agtatt 527  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  20362696 gaaacgtttactatgataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatttaccaccagctaggagtatt 20362597  T
Q  528 ttcaactagtgccatggacgattgcagtggcggannnnnnnnnnnnnnnn-acaaccgtgtggccaatttgtgaaggatagtggcacaatggcagatttt 626  Q
    ||||||||||||||||||||||||||||||| ||                 ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  20362596 ttcaactagtgccatggacgattgcagtggcagatttatttttatttttttacagccgtgtggccaatttgtgaaggatagtggcacaagggcagatttt 20362497  T
Q  627 ttgttaacttgataacaccaaaatccaaaacatgaaannnnnnnnnnnnnnnnncccaaatatcaaaccacaaaggcaagaagatcacattaacttaatt 726  Q
    |||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||    
T  20362496 ttgttaacttgataacaccaaaatccaaaacatgaaaagaggagagagagagagcccaaatatcaaaccacaaaggcaagaagatcacattaacttaatt 20362397  T
Q  727 tcagagatctaatacacggtttcagcattccacaatcatgaattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttcta 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20362396 tcagagatctaatacacggtttcagcattccacaatcatgaattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttcta 20362297  T
Q  827 gtcattcaatgggagcagacataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtg 926  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20362296 gtcattcaatgggagcagacataatggttcgcggatcaaattaaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtg 20362197  T
Q  927 agagatatcatcccaattacacagaaataccatggtacataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttcca 1026  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20362196 agagatatcatcccaattacacagaaataccatggtacataaagtcataaacacccatcatatttatttaattaactacacctacaaacaagtctttcca 20362097  T
Q  1027 gcgcaaccaaaacaagcatattcatggcaggtagattcctgcaaaaggaatacataatcaagggt 1091  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20362096 gcgcaaccaaaacaagcatatccatggcaggtagattcctgcaaaaggaatacataatcaagggt 20362032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 20363057 - 20362967
Alignment:
Q  162 ggaaatatcttagtgacatattactagtaagatatttactttgcttctaacgaatgtcattagatcaagaaaagtgaggtaaaatttgcat 252  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20363057 ggaaatatcttagtgacatattagtagtaagatatttactttgcttctaacgaatgtcattagatcaagaaaagtgaggtaaaatttgcat 20362967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 20363293 - 20363243
Alignment:
Q  9 agcataggaaataaataattttaatgtaagttgtttgattcaattttttga 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20363293 agcataggaaataaataattttaatgtaagttgtttgattcaattttttga 20363243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 20363167 - 20363127
Alignment:
Q  52 ttttttgacaatacaagtcattattttctactattatgagc 92  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20363167 ttttttgacaatacaagtcattattttctactattatgagc 20363127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 312 - 939
Target Start/End: Complemental strand, 21550529 - 21549882
Alignment:
Q  312 taaaccagagagaaa-tttctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttccc 410  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  21550529 taaaccagagaaaaaatttctcctaactgactctaacgacttaacagaatgagtcacacattaccctcgcacctaatgccactactctccctcatttccc 21550430  T
Q  411 agcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaattta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21550429 agcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaattta 21550330  T
Q  511 ccaccagcaagagtattttcaactagtgccatggacgattgcagtggcggannnnnnnnnnnnnnnnacaaccgtgtggccaatttgtgaaggatagtgg 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||    
T  21550329 ccaccagcaagagtattttcaactagtgccatggacgattgcagtggcgga------ttttttttttacaaccgtgtggccaatttgtgaaggatagtgg 21550236  T
Q  611 cacaatggcagattttttgttaac------------ttgataacaccaaaatccaaaacatgaaannnnnnnnnnnnnnnnncccaaatatcaaaccaca 698  Q
    ||| | |||||||||||||||| |            |||||||||||||||||||| | ||||||                 ||||||||||||||||||    
T  21550235 caccagggcagattttttgttatcctccatatgtgattgataacaccaaaatccaagatatgaaa--agaggggagagagagcccaaatatcaaaccaca 21550138  T
Q  699 aaggcaagaagatcacattaacttaatttcag---------agatctaatacacggtttcagcattccacaatcatgaattatgagacatgaa--tttag 787  Q
    ||||||  |||||||| |||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||    
T  21550137 aaggca--aagatcacgttaacttaatttcagatcaggttaagatctaatacacggtttcagctttccacaatcatgaattatgagacatgaatttttag 21550040  T
Q  788 caatggaagtaataaatgactgtgacataacaacttctagtcattcaatgggag------cagacataatggttcgcggatcaaattaaaaaagaaacga 881  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||||||||      ||| ||||||||||||| ||||||||||| ||||||| ||    
T  21550039 caatggaagtaataaatgactatgacataacaacttggagtcattcaatgggagaaaatacaggcataatggttcgcagatcaaattaagaaagaaatga 21549940  T
Q  882 aactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcc 939  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21549939 aactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcc 21549882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1049 - 1091
Target Start/End: Complemental strand, 21549882 - 21549840
Alignment:
Q  1049 catggcaggtagattcctgcaaaaggaatacataatcaagggt 1091  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  21549882 catggcaggtagattcctgcaaaaggaatgcataattaagggt 21549840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 21550558 - 21550520
Alignment:
Q  260 aatggtggaaatgcaggaaaaacagaatgtaaaccagag 298  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21550558 aatggtggaaatgcaggaaaaacaaaatgtaaaccagag 21550520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 8e-95; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 8e-95
Query Start/End: Original strand, 260 - 486
Target Start/End: Complemental strand, 32195061 - 32194831
Alignment:
Q  260 aatggtggaaatgcaggaaa-aacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatttctcctaactgactctaacgac---ttaac 355  Q
    |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  32195061 aatggtggaaatgcaggaaataacagaatgtaaaccagagttgtgtgaactcctaaaccagagagaaatttctcctaactgactctaacgacgacttaac 32194962  T
Q  356 agaatgagtcacacattacccttgcacctaatgccactactctccttcatttcccagcttaacagtgccccttgaaacgtttactaagataaacattcca 455  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32194961 agaatgagtgacacattaccgtcgcacctaatgccactactctccttcattccccagcttaacagtgccccttgaaacgtttactatgataaacattcca 32194862  T
Q  456 aaaatggggtctatttcctcatggtccctaa 486  Q
    ||||||||||||||||||||||| |||||||    
T  32194861 aaaatggggtctatttcctcatgttccctaa 32194831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 499 - 557
Target Start/End: Complemental strand, 32194838 - 32194775
Alignment:
Q  499 ttccctaatttaccaccagcaag-----agtattttcaactagtgccatggacgattgcagtgg 557  Q
    |||||||||||||||||||| ||     |||||||| |||||||||||||||||||||||||||    
T  32194838 ttccctaatttaccaccagctagctaggagtatttttaactagtgccatggacgattgcagtgg 32194775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 588 - 634
Target Start/End: Complemental strand, 32194748 - 32194702
Alignment:
Q  588 ggccaatttgtgaaggatagtggcacaatggcagattttttgttaac 634  Q
    |||||||||||||||||||||||||| | || |||||||||||||||    
T  32194748 ggccaatttgtgaaggatagtggcaccagggaagattttttgttaac 32194702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 24364364 - 24364262
Alignment:
Q  261 atggtggaaatgcaggaaaaacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatttctcctaactgactctaacgacttaacagaat 360  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||| ||| || |||||    
T  24364364 atggtggaaatgcaggaaaa-cggaatgtaaaccagagttctatgaactcctaaaccagaaagaaatccctcctaactgactctaacaactcaaaagaat 24364266  T
Q  361 gagt 364  Q
    ||||    
T  24364265 gagt 24364262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 35674624 - 35674579
Alignment:
Q  276 gaaaaacagaatgtaaaccagagttctttgaactcctaaaccagag 321  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||    
T  35674624 gaaaaacagaatgtaaaccagagttttaggaactcctaaaccagag 35674579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 44314087 - 44314026
Alignment:
Q  164 aaatatcttagtgacatattactagtaagatatttactttgcttctaacgaatgtcattaga 225  Q
    ||||||||||| ||| ||||||||||||||||| ||||||| |||||||| |||||||||||    
T  44314087 aaatatcttagagacgtattactagtaagatatatactttgtttctaacgcatgtcattaga 44314026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 681 - 718
Target Start/End: Complemental strand, 44313778 - 44313741
Alignment:
Q  681 cccaaatatcaaaccacaaaggcaagaagatcacatta 718  Q
    |||||||||||||| |||||||||||||||||||||||    
T  44313778 cccaaatatcaaacgacaaaggcaagaagatcacatta 44313741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University