View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18082_high_2 (Length: 425)
Name: NF18082_high_2
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18082_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 28749210 - 28748814
Alignment:
| Q |
19 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749210 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
28749111 |
T |
|
| Q |
119 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28749110 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcctttcccacctac |
28749011 |
T |
|
| Q |
219 |
aatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataattgcaataatctca |
318 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28749010 |
aatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcgcaggctatgtcataattgcaataatctca |
28748911 |
T |
|
| Q |
319 |
atcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgcaatgcctatg |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28748910 |
atcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgcaatgcctatg |
28748814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 28753223 - 28752827
Alignment:
| Q |
19 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28753223 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
28753124 |
T |
|
| Q |
119 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28753123 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcctttcccacctac |
28753024 |
T |
|
| Q |
219 |
aatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataattgcaataatctca |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
28753023 |
aatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcgcaggctatgtcataattgcaataatctca |
28752924 |
T |
|
| Q |
319 |
atcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgcaatgcctatg |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28752923 |
atcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgcaatgcctatg |
28752827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 28739259 - 28738865
Alignment:
| Q |
19 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
118 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28739259 |
gataatgtatttctttggtcttttcctaattgtattctttttaaatcacaggttttcatatccatagcaatgatccttggtgatggtctatacaactttg |
28739160 |
T |
|
| Q |
119 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctac |
218 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || | || |||||||| |||||||||| | ||||| | || ||||||||||||||||||||| |||||| |
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|
| T |
28739159 |
tgaaagttcttagcacaactcttataggtatgtacaagcaatggaacaaaaaagacaaaggagcagagtctaatgatccaaatgctcctctccaacctac |
28739060 |
T |
|
| Q |
219 |
aatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataattgcaataatctca |
318 |
Q |
| |
|
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||||||| ||||| ||| |
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| T |
28739059 |
actttcatttgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcctggttttctatcgcaggctatgtcataattggtataatttca |
28738960 |
T |
|
| Q |
319 |
atcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgcaatgccta |
413 |
Q |
| |
|
|| ||||| || || |||||||| |||||| ||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28738959 |
ataattaccataccccacatttttcaccagataaagtggtatcacgtcattttgatttacatcattgcacccgcactagccttttgcaatgccta |
28738865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 415
Target Start/End: Original strand, 39943688 - 39944082
Alignment:
| Q |
21 |
taatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtg |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
39943688 |
taatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgtg |
39943787 |
T |
|
| Q |
121 |
aaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctacaa |
220 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||||| |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
39943788 |
aaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaagacaaaggagcacagtctgaggatccaaatgctcctctcccacctacac |
39943887 |
T |
|
| Q |
221 |
tttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataattgcaataatctcaat |
320 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39943888 |
tttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccctcctggtttgctatcgcaggctatgtcataattgcaataatctcaat |
39943987 |
T |
|
| Q |
321 |
cattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgcaatgcctatg |
415 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
39943988 |
cattaccatcccccacattttccaccagctaaagtggtatcacatcatttgtatttacatcattgcacccgcactagccttttgcaatgcctatg |
39944082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 29246126 - 29246074
Alignment:
| Q |
67 |
caggttttcatagccatagcaatgatccttggtgatggtctatacaactttgt |
119 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
29246126 |
caggtatttatagccatagccatgatccttggagatggtctatacaactttgt |
29246074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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