View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18082_high_5 (Length: 345)
Name: NF18082_high_5
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18082_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 7349164 - 7349040
Alignment:
| Q |
54 |
agaaaatattaaaacagttggttagaaaaataaa-cgacacagcaggttatatagctgaatcgaaaaaacctatgggagataaggaaagaatatacaaac |
152 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7349164 |
agaaagtattaaaacagttggttagaaaaataaaacgacacagcaggttatatagctgaatcgaaaaaacctatgggagataaggaaagaatatacaaac |
7349065 |
T |
|
| Q |
153 |
cagtgatgcaatgataggagagcaa |
177 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7349064 |
cagtgatgcaatgataggagagcaa |
7349040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 7348861 - 7348794
Alignment:
| Q |
278 |
attaaaagcgcaacatagtgaatgggttgagacgatggtgagaggaaatggagacaaaagagtgtgga |
345 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7348861 |
attaaaagcgcaacatagtgaaagggttgagacgatggtgagaggcaatggagacaaaagagtgtgga |
7348794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 7349043 - 7348994
Alignment:
| Q |
231 |
gcaaaaaggcaaagtgagctgttaacaaaccataaatttataacatgatt |
280 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7349043 |
gcaaaaaggcaaagggagctgttaacaaaccataaatttataacatgatt |
7348994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 7349256 - 7349210
Alignment:
| Q |
9 |
cattattcctccggattattttttgtttaatgctgcttattgattag |
55 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7349256 |
cattcttcttccggatcattttttgtttaatgctgcttattgattag |
7349210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 39181046 - 39180917
Alignment:
| Q |
146 |
tacaaaccagtgatgcaatgataggagagcaacgcttcaacaggacgatcggccattcttaatgaggtctgctagaaatttgtttgcaaaaaggcaaagt |
245 |
Q |
| |
|
||||||||| || ||||||| ||||||| || ||||||||||||||| | |||| | |||||| |||| || | || ||||| |||||||||||| |
|
|
| T |
39181046 |
tacaaaccatcgaggcaatgacaggagagtaatgcttcaacaggacgaacaaccatattgaatgagttctgttacgatttggtttgaaaaaaggcaaagg |
39180947 |
T |
|
| Q |
246 |
gagctgttaacaaaccataaatttataaca |
275 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
39180946 |
gagctgttaacaaaccatcaatttataaca |
39180917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University