View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18082_high_6 (Length: 317)
Name: NF18082_high_6
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18082_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 32616725 - 32616446
Alignment:
| Q |
17 |
acaaactccttaaaatattgttctaattttacaggggcttaagaacttcaacaaacaagccagagatcttatcacacgccttcagaagattgatggtgac |
116 |
Q |
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| T |
32616725 |
acaaactccttaaaatattgttctaattttacaggggcttaagaacttcaacaaacaagccagagatcttatcacacgccttcagaagattgatggtgac |
32616626 |
T |
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| Q |
117 |
aattatcctgaagtatgtatttgatctaattcgttaattcagatttcgagaa-nnnnnnnnnnnnnnnnnnnnnatgcaaataaatattgtggattacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32616625 |
aattatcctgaagtatgtatttgatctaattcgttaattcagatttcgagaattttttttgttgaattttttttatgcaaataaatattgtggattacta |
32616526 |
T |
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| Q |
216 |
ctgagttgtaatatcataaaattggttgattcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatt |
295 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616525 |
ctgagttgtaatatcatcaaattggttgattcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatt |
32616446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 8070983 - 8071044
Alignment:
| Q |
234 |
aaattggttgattcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatt |
295 |
Q |
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| T |
8070983 |
aaattggttgcttcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatt |
8071044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 5327189 - 5327225
Alignment:
| Q |
96 |
cttcagaagattgatggtgacaattatcctgaagtat |
132 |
Q |
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| T |
5327189 |
cttcagaagattgatggtgacaactatcctgaggtat |
5327225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 54773353 - 54773389
Alignment:
| Q |
96 |
cttcagaagattgatggtgacaattatcctgaagtat |
132 |
Q |
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||||||||||||||||||||||| |||||||| |||| |
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| T |
54773353 |
cttcagaagattgatggtgacaactatcctgaggtat |
54773389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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