View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18082_high_8 (Length: 268)
Name: NF18082_high_8
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18082_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27744609 - 27744855
Alignment:
| Q |
1 |
aaattctactacagacgaagaagaagatacatacacagatgaagatactgacacacttgatatgcaggtacttttatgcccaaactgagatatttgcagg |
100 |
Q |
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| T |
27744609 |
aaattctactacagacgaagaagaagatacatacacagatgaagatactgacacacttgatatgcaggtacttttatgcccaaactgagatacttgcagg |
27744708 |
T |
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| Q |
101 |
gaccaagcacatgtttaannnnnnnnnnnncttccttcgttattagtgtttttgttgttattaaataggatcaggaagacaaggtatcggtgattgagaa |
200 |
Q |
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| T |
27744709 |
gaccaagcacatgtttaaattttttt-----ttccttcgttattagtgtttttgttgttattaaataggatcaggaagacgaggtatcggtgattgataa |
27744803 |
T |
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| Q |
201 |
agatacttataggcttgctgttgtcaacatggactggaactatgtgaaggtg |
252 |
Q |
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| T |
27744804 |
agatacttataggcttgctgttgtcaacatggactggaactatgtgaaggtg |
27744855 |
T |
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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 49513556 - 49513658
Alignment:
| Q |
147 |
tgtttttgttgttattaaataggatcaggaagacaaggtatcggtgattgagaaagatacttataggcttgctgttgtcaacatggactggaactatgtg |
246 |
Q |
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|||| |||||||||| |||||||| || ||||| |||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |
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| T |
49513556 |
tgttgttgttgttataaaataggaacacgaaga---ggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtg |
49513652 |
T |
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| Q |
247 |
aaggtg |
252 |
Q |
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| T |
49513653 |
aaggtg |
49513658 |
T |
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