View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18082_low_14 (Length: 230)
Name: NF18082_low_14
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18082_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 13077462 - 13077662
Alignment:
| Q |
20 |
gaatccaactcaattttagaagtgaattcttctggttctctttgatgttctctcaatggagtttcatgtactttttcatgcactttatttgctactcttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
13077462 |
gaatccaactcaattttagaagtgaattcttctggttctctttgatgttctctcaatggagtttcatgtactttttcatgcactttatctgctacccttt |
13077561 |
T |
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| Q |
120 |
tggatccacaagccttgtcaaatggtgtagtcctttcctccatttgatacttctctttctcttcttcactctttgcaatctttaacccttccatattctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13077562 |
tggatccacaagccttgtcaaatggtgtagtcctttcctccatttgatacttctctttctcttcttcactctttgcaatctttaacccttccattttctt |
13077661 |
T |
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| Q |
220 |
c |
220 |
Q |
| |
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| |
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| T |
13077662 |
c |
13077662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 13073258 - 13073458
Alignment:
| Q |
20 |
gaatccaactcaattttagaagtgaattcttctggttctctttgatgttctctcaatggagtttcatgtactttttcatgcactttatttgctactcttt |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
13073258 |
gaatccaactcaattttaaaagtgaattcttctggttatctttgatgttctctcaatggagtttcatgtactttttcatgcactttatctgctacccttt |
13073357 |
T |
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| Q |
120 |
tggatccacaagccttgtcaaatggtgtagtcctttcctccatttgatacttctctttctcttcttcactctttgcaatctttaacccttccatattctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13073358 |
tggatccacaagccttgtcaaatggtgtagtcctttcctccatttgatacttctctttctcttcttcactctttgcaatctttaacccttccattttctt |
13073457 |
T |
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| Q |
220 |
c |
220 |
Q |
| |
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| |
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| T |
13073458 |
c |
13073458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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