View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18082_low_2 (Length: 518)
Name: NF18082_low_2
Description: NF18082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18082_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 26800468 - 26799982
Alignment:
| Q |
18 |
accaagacacggcggtcacggagggttaagagagaacctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatgg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
26800468 |
accaagacacggcggtcacggagggttaagagagaaccttttactttgaacacgatgttgccgttgacatcagtgacggcaaagtttccatctgaaatgg |
26800369 |
T |
|
| Q |
118 |
tcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccgaatatggcggtggggtatgccggcatcggcggtgcagaagc |
217 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
26800368 |
tcataacctttttcacgacagccaaatccaccggatatggagcacaatattgctgtccgaatatggcagtggggtgtgccggcatcggcggtgcagaagc |
26800269 |
T |
|
| Q |
218 |
atattgttgtggttgataaggataagccataatgacgatgatgatggctcttgaattttgtctttgtgattaaatcaaagtcttgtttgctctttttgtt |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26800268 |
atattgctgtggttgataaggataagccataatgacgatgatgatagctcttgaattttgtctttgtgattaaatcagagtcttgtttgctctttttgtt |
26800169 |
T |
|
| Q |
318 |
tgtaaatatatatgtgagaataattggatggatggttatggtttaaatgtcttagtatcttatataaataataatttgattggtttgtttttcgttgttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26800168 |
tgtaaatatatatgtgagaataattggatggatggttatggtttaaatgtctaagtatcttatataaataataatttgattggtttgtttttcgttgttg |
26800069 |
T |
|
| Q |
418 |
ataatatttgattgattttcaggtcagaaaagaatatttgattgannnnnnncggtcaaaagatatatttgaataacacgtacaagaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26800068 |
ataatatttgattgattttcaggtcagaaaagaatatttgattga-ttttttcggtcaaaagatatatttgaataacacgtacaagaa |
26799982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 26795675 - 26795509
Alignment:
| Q |
20 |
caagacacggcggtcacggagggttaagagagaacctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatggtc |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||| || || |||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
26795675 |
caagacacggcgatcacggagggttaagagagagcctttaactttgaagacaatattgccgttgacatcagtaacagcgaagtttccgtctgaaatggtc |
26795576 |
T |
|
| Q |
120 |
ataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccgaatatggcgg |
186 |
Q |
| |
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|| ||||| ||||| || || | |||||||||||| |||||||||||||| | ||||||||||||| |
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| T |
26795575 |
atcacctttttcaccacggcaagatccaccggatacggagcacaatattgaggaccgaatatggcgg |
26795509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 26805570 - 26805336
Alignment:
| Q |
18 |
accaagacacggcggtcacggagggttaagagagaacctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatgg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| |||| |||||||| || || |||||||||||||| || ||| |||||||||| || ||||| | |
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| T |
26805570 |
accaagacacggcggtcacggaaggttaaaagagaaactttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattg |
26805471 |
T |
|
| Q |
118 |
tcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccgaatatggcggtggggtatgccggcatcggcggtgcagaagc |
217 |
Q |
| |
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|| ||||| || || || |||||||||| ||||| |||||||||||||| | || ||||||| ||| || ||||||||||||||||||| || |
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| T |
26805470 |
ctatcacctttttgaccacagccaaatccaatggatacggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggc |
26805371 |
T |
|
| Q |
218 |
atattgttgtggttgataaggataagccataatga |
252 |
Q |
| |
|
| || ||||||||||||||||||||||||| |||| |
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| T |
26805370 |
agatggttgtggttgataaggataagccatgatga |
26805336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 26789767 - 26789619
Alignment:
| Q |
18 |
accaagacacggcggtcacggagggttaagagagaacctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| |||||||| |||| | |||||| || | |||| |
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|
| T |
26789767 |
accaagacacggcggtcacggagggttaagagagaacctttgactttaaacacgacgttgccattgacatctttaacagtgaagtt---gtctgccatgg |
26789671 |
T |
|
| Q |
118 |
tcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattg |
169 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| |
|
|
| T |
26789670 |
tcattacctttttcacaaccgctaaatccaccggttaaggagcacaatattg |
26789619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 26836267 - 26836039
Alignment:
| Q |
18 |
accaagacacggcggtcacggagggttaagagagaacctttcactttgaacactatgttgccgttgacatcagtaacggcgaagtttccatccgaaatgg |
117 |
Q |
| |
|
|||||||||||| ||||||| | ||| || | |||||| || |||||||| |||||||||||||||||||||||||||| ||||| || | ||||| |
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|
| T |
26836267 |
accaagacacggtggtcacgtatggtaaacacagaacccttaactttgaaaactatgttgccgttgacatcagtaacggttaagtt---gtctgcaatgg |
26836171 |
T |
|
| Q |
118 |
tcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccgaatatggcggtggggtatgccggcatcggcggtgcagaagc |
217 |
Q |
| |
|
|||| ||||| ||||| ||||| | |||||||||||||||| ||||||||| | || | ||||| ||||||| || ||||| ||||||||| | |
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|
| T |
26836170 |
tcatcacctttttcaccaccgcgagttccaccggatatggagtacaatattgagggcctattatggtggtggggagtggtggcat---cggtgcagagga |
26836074 |
T |
|
| Q |
218 |
atattgttgtggttgataaggataagccataatga |
252 |
Q |
| |
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| | ||||||||||||||||||||||||| |||| |
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|
| T |
26836073 |
agaaggttgtggttgataaggataagccatgatga |
26836039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 26824300 - 26824165
Alignment:
| Q |
113 |
aatggtcataaccttcttcacgaccgccaaatccaccggatatggagcacaatattgctgtccgaatatggcggtggggtatgccggcatcggcggtgca |
212 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||| ||||||||| ||| |||||||||| | | | ||||| ||| || ||||||||||||||||| |
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|
| T |
26824300 |
aatggtcatcacctttttcactacggccaaattcaccggatacggatcacaatattgagggcatattatggtggttggaagcaccggcatcggcggtgca |
26824201 |
T |
|
| Q |
213 |
gaagcatattgttgtggttgataaggataagccata |
248 |
Q |
| |
|
|| ||| || ||||||||||| |||||||||||||| |
|
|
| T |
26824200 |
gaggcagatggttgtggttgacaaggataagccata |
26824165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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