View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18084_high_3 (Length: 352)
Name: NF18084_high_3
Description: NF18084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18084_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 47253023 - 47253358
Alignment:
| Q |
1 |
tcactcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaactt |
100 |
Q |
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| T |
47253023 |
tcactcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaactt |
47253122 |
T |
|
| Q |
101 |
gcaataataagaaccagctatatattaactataacaaagaaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatgatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47253123 |
gcaataataagaaccagctatatattaactataacaaagaaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatgatgca |
47253222 |
T |
|
| Q |
201 |
gcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgcaata |
300 |
Q |
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| T |
47253223 |
gcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgcaata |
47253322 |
T |
|
| Q |
301 |
gattctcaacattaaatgcattgaaatacagaaatt |
336 |
Q |
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| T |
47253323 |
gattctcaacattaaatgcattgaaatacagaaatt |
47253358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 328
Target Start/End: Original strand, 47241780 - 47242100
Alignment:
| Q |
5 |
tcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgcaa |
104 |
Q |
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| T |
47241780 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
47241879 |
T |
|
| Q |
105 |
taataagaaccagctatatattaactataacaaag--------aaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatga |
196 |
Q |
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| T |
47241880 |
taataagaa-----------ttaactataacaaatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaagga |
47241968 |
T |
|
| Q |
197 |
tgcagcccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgc |
296 |
Q |
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||| ||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| ||||| || |||||| || ||||||| | ||||| ||||| |
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| T |
47241969 |
tgctgcccttcttgacaaatacaagtcatgtaaaatcataacacattcttccaattcagccgacttgtaacccagacattcacatagggatgaagtctga |
47242068 |
T |
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| Q |
297 |
aatagattctcaacattaaatgcattgaaata |
328 |
Q |
| |
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| T |
47242069 |
aatagattcgcaacattaagtaccttgaaata |
47242100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 47248227 - 47248535
Alignment:
| Q |
3 |
actcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgc |
102 |
Q |
| |
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|||||| | ||||||||||||||||||| ||||| |||||||| |||||||||||| || ||||||| || | || | ||||||||||| ||||||| |
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| T |
47248227 |
actctttttcaaagtaatgatttggtatctctggcgatgaaggcaggtttgccacacattttaactgttccagaaaacgatttcaagtcaatgaacttgc |
47248326 |
T |
|
| Q |
103 |
aataataagaaccagctatatattaactataacaaagaaaggctaaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatgatgcagc |
202 |
Q |
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| T |
47248327 |
aataataagaaataactata-acaaa--agaattgtcaaaagttaaaacaatcaccttgttctgcttgtatttgtcacgaacagctttgaaggatcctgc |
47248423 |
T |
|
| Q |
203 |
ccttcttaccaaatacaaatcatgcaaaatcagaacacattcctccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgcaataga |
302 |
Q |
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| T |
47248424 |
ctttcttgacatatacaaatcatgtaaaatgataacacaatcttctaaattagccgatgtgtaacccaagcattcacacagggaaggagtctgcaataga |
47248523 |
T |
|
| Q |
303 |
ttctcaacatta |
314 |
Q |
| |
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|||| ||||||| |
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| T |
47248524 |
ttctgaacatta |
47248535 |
T |
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