View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18084_high_4 (Length: 326)
Name: NF18084_high_4
Description: NF18084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18084_high_4 |
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| [»] scaffold0958 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 6241564 - 6241271
Alignment:
| Q |
1 |
tcacattccattgattcaacacaatttggtccaggttagagttatagataattttgcctattcacgaatatttggatataattgtttatttctttcacaa |
100 |
Q |
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| T |
6241564 |
tcacatttcatttatttaaca-aatttggtccaggttacagttatagatagttatgcctattcacgagtatttggatataattgtttatttctttcacaa |
6241466 |
T |
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| Q |
101 |
ggnnnnnnnnnattgtaatgattacaacataattaatatgtaattttctgttagaagttgaatgatgacatttattgagagaaagatagtagagaaaatg |
200 |
Q |
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| T |
6241465 |
ggtttttac---tggtaatgattacaacataattaatatgtaattttctgttagaagttgaatgatgacatttattgagagaaagatagtagagaaaatg |
6241369 |
T |
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| Q |
201 |
aggttcagtgatatccaagtaacactattctgtctttcttttcaggcatttggataacaaatttttgacccaagtttgatatacaaagtcactctttc |
298 |
Q |
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| T |
6241368 |
aggttcagtgatagccaagtaacactattctgtctttcttttcaggcatttagaaaacatatttttgaccaaagtttgatatacaaagtctctctttc |
6241271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 61 - 324
Target Start/End: Complemental strand, 6233639 - 6233377
Alignment:
| Q |
61 |
ttcacgaatatttggatataattgtttatttctttcacaaggnnnnnnnnnattgtaatgattacaacataattaatatgtaattttctgttagaagttg |
160 |
Q |
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| T |
6233639 |
ttcacgagtatttggatataattgtttatttctttcacaag--ttttttatatggtaatgattataacataattaatatgtaattttctgttagaagttg |
6233542 |
T |
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| Q |
161 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatatccaagtaacactattctgtctttcttttcaggcatttggataacaa |
260 |
Q |
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| T |
6233541 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttcttttcaggcacttagaaaacaa |
6233442 |
T |
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| Q |
261 |
at-ttttgacccaagtttgatatacaaagtcactctttcgttaatgaggttttatttgcaagaat |
324 |
Q |
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| T |
6233441 |
attttttgatcaaagtttgatattcaaagtctctctttcgttaatgaggttttgtttggaagaat |
6233377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6233732 - 6233635
Alignment:
| Q |
1 |
tcacattccattgattcaacacaatttggtccaggttagagttatagataattttgcctattcacgaatatttggatataattgtttatttctttcac |
98 |
Q |
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| T |
6233732 |
tcacattccattgattgaacacaatttggttcaggttacagttatagatagtcatgcctattcacgagtatttggatataattgtttatttctttcac |
6233635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 13283535 - 13283602
Alignment:
| Q |
116 |
taatgattacaacataattaatatgtaattttctgttagaagttgaatgatgacatttattgagagaa |
183 |
Q |
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| T |
13283535 |
taatgattacaacatatttaatatgtaattttatgttagaagttgaatgatgacatttatggagagaa |
13283602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 6914018 - 6913980
Alignment:
| Q |
136 |
atatgtaattttctgttagaagttgaatgatgacattta |
174 |
Q |
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| T |
6914018 |
atatgtaattttctgttagaatttgaatgatgacattta |
6913980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 2822 - 2872
Alignment:
| Q |
123 |
tacaacataattaatatgtaattttctgttagaagttgaatgatgacattt |
173 |
Q |
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| T |
2822 |
tacaacataattgatgtgtaattttctgttaaatgttgaatgataacattt |
2872 |
T |
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