View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18084_low_2 (Length: 479)
Name: NF18084_low_2
Description: NF18084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18084_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 23244713 - 23245091
Alignment:
| Q |
22 |
tcctggtgtttcgttagccatgcaagaagtgccagcattgcttggtgcaattattcagtgttttgattttaaggttgtggaccacaaaactgggatgatt |
121 |
Q |
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| T |
23244713 |
tcctggtgtttcgttagccatgcaagaagtgccagcattgcttggtgcaattattcagtgttttgattttaaggttgtggaccacaaaactgggatgatt |
23244812 |
T |
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| Q |
122 |
ttaaatgatgttggtgatattgatgttgatgaacggccaggtttgactgctccaagagttaataatcttctgtgtgt------------------atgtg |
203 |
Q |
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| T |
23244813 |
ttaaatgatgttggtgatattgatgttgatgaacggccaggtttgactgctccaagagttaataatcttctgtgtgttcctgttgagaggacaaaatgtg |
23244912 |
T |
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| Q |
204 |
gggccacttgaaattattaatccttggattttagtagatatttgaataacacgtgtaggatgtatgaggtatcatggattcatgtacgtgcttccttttt |
303 |
Q |
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| T |
23244913 |
gggccacttgaaattattaatccttggattttagtagatatttgaataacacgtgtaggatgtatgaggtatcatggattcatgtacgtgcttccttttt |
23245012 |
T |
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| Q |
304 |
taatgttgttccatgcatggcacaagtcttaattggattcatgtataaatgaacatcttgtggttcagaaataattgtg |
382 |
Q |
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| T |
23245013 |
taatgttgttccatgcatgacacaagtgttaattggattcatgtataaatgaacatcttgtggttcagaaataattgtg |
23245091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 23245118 - 23245185
Alignment:
| Q |
378 |
ttgtgtgtttttccatttaataaaatggcgattttgcaatataatctcctcttgcaagattcaccctc |
445 |
Q |
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| T |
23245118 |
ttgtgtgtttttccatttaataaaatggcgattttgcaatataatctcctcttgcaagattcaccctc |
23245185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 9381250 - 9381179
Alignment:
| Q |
22 |
tcctggtgtttcgttagccatgcaagaagtgccagcattgcttggtgcaattattcagtgttttgattttaa |
93 |
Q |
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| T |
9381250 |
tcctggagttactttagcaatgcaagaagttccagctttgcttggtgctataattcaatgctttgattttaa |
9381179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 9398675 - 9398604
Alignment:
| Q |
22 |
tcctggtgtttcgttagccatgcaagaagtgccagcattgcttggtgcaattattcagtgttttgattttaa |
93 |
Q |
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| T |
9398675 |
tcctggggttactttagcaatgcaagaagttccagctttgcttggtgccataattcaatgctttgattttaa |
9398604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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