View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18084_low_3 (Length: 405)
Name: NF18084_low_3
Description: NF18084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18084_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 131 - 386
Target Start/End: Original strand, 48506486 - 48506738
Alignment:
| Q |
131 |
attataacttgaactaataattggatactggcggaattaaagaatcaccggcggatgtgttttttgaaatactgtcggaattagtgaattactagcggat |
230 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48506486 |
attataacttgaactaataattgggtactggcggaattaaagaatcaccggcggatgtgttttttgaaataccgtcggaattagtgaattactagcggat |
48506585 |
T |
|
| Q |
231 |
tctaaattcataggattactggcagattttaatgggtacgggctgattgtttattttattactaacagatttcatccgccaataatacgatgccatgtgc |
330 |
Q |
| |
|
||| |||||| | |||||||||| || |||||||||||| ||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48506586 |
tcttaattcaca-gattactggccgactttaatgggtactggcgaattgttta--ttattactgacagatttcatccgccagtaatacgatgccatgtgc |
48506682 |
T |
|
| Q |
331 |
agctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggaga |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
48506683 |
agctgtcatgcaccatcattattgacggaaatgatccgtcagtgatgtaagagaga |
48506738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 186 - 386
Target Start/End: Complemental strand, 40927497 - 40927318
Alignment:
| Q |
186 |
tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcataggattactggcagattttaatgggtacgggctgattgtttatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
40927497 |
tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcat----------gcagactttaatgggtactggcggattgtttatt |
40927408 |
T |
|
| Q |
286 |
ttattactaacagatttcatccgccaataatacgatgccatgtgcagctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggag |
385 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
40927407 |
--actactgacagatttcat---------atacgatgccatgtgcagctgttatgcaccatcattattgacggaaatgatccgtcagtaatgcaagggag |
40927319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 40927530 - 40927485
Alignment:
| Q |
76 |
acattagatgtgtgtttctggatagctcctccttattttgttttttgaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
40927530 |
acattagatgtgtgtttctggatagc---tccttattgtgttttttgaa |
40927485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University