View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18084_low_6 (Length: 294)
Name: NF18084_low_6
Description: NF18084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18084_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 11671224 - 11671486
Alignment:
| Q |
18 |
aacacgagcatgacacgctatgtcatatttgtnnnnnnnggtgtctacaaagggaaaattgtgattggtcgcgtaaaatggaacatcgcagtgattgaag |
117 |
Q |
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| T |
11671224 |
aacacgagcatgacacgctatgtcatatttgtaaagaaaggtgtctacaaagggaaaattgtgattggtcgcgtaaagtggaacatcgtagtgattggag |
11671323 |
T |
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| Q |
118 |
agggaatggatcccaccatcatcttgggtagcatcggttgtcatggaaacaagtcgaatgcatgcacatatgactcgactacatttggtaaggatatgaa |
217 |
Q |
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| T |
11671324 |
agggaatggatcccaccatcatcttgggtagcatcggttgtcatggaaacaagtcgaatgcatgcacatacgactcgactacatttggtaaggatatgaa |
11671423 |
T |
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| Q |
218 |
cccttcaaccctattctactcgaattttccctcctttttctatgttttttatttgttatcttc |
280 |
Q |
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| T |
11671424 |
tccttcaatcctattctactcgaattttccctcctttttctatgttttttatttgttatcttc |
11671486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 11672656 - 11672756
Alignment:
| Q |
180 |
tgcacatatgactcgactacatttggtaaggatatgaacccttcaaccctattctactcgaattttccctc-ctttttctatgttttttatttgttatct |
278 |
Q |
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|||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
11672656 |
tgcatatatgactaggctacatttggtaaggatatgaatccttcaaccctattctactcgaattttccctctttttttttatgttttttatttgttatct |
11672755 |
T |
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| Q |
279 |
t |
279 |
Q |
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| T |
11672756 |
t |
11672756 |
T |
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