View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18084_low_7 (Length: 293)
Name: NF18084_low_7
Description: NF18084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18084_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 27263178 - 27263306
Alignment:
| Q |
1 |
ttggattactgccttggtatccagcatacaaagtaaagctatgaaactattataaggccaacttttgataaatctaaaccgatggtgtctatacaaagtg |
100 |
Q |
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| T |
27263178 |
ttggattactgccttggtatccagcatacaaagtaaagctatgaaactattataaggccaacttttgataaatctaaaccgatggtgtctatacaaagtg |
27263277 |
T |
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| Q |
101 |
cttacctatacgcaggcgatgaaactata |
129 |
Q |
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| T |
27263278 |
cttacctatacgcaggtgatgaaactata |
27263306 |
T |
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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 129 - 277
Target Start/End: Original strand, 36797761 - 36797914
Alignment:
| Q |
129 |
aaatattacactgacatcctagttttcttttttatctttctttaatact-gaaataaaacaatggtgttaaaactaattgaaaa-cttaccactcca--- |
223 |
Q |
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| T |
36797761 |
aaatattaaactgacatcatatttttcttttttatctttccttactactcgaaataaaataatggtattaaaactaaatgaaaaacttaccactccacca |
36797860 |
T |
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| Q |
224 |
tataaatagccaattgcatatccccctggtatacacatgtaaaatatagaaagc |
277 |
Q |
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| T |
36797861 |
tatacatagccaattgcatatccccctggtatacacatgtaaaatatagaaagc |
36797914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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