View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18086_high_3 (Length: 430)
Name: NF18086_high_3
Description: NF18086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18086_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 23427738 - 23428125
Alignment:
| Q |
19 |
gaatttcacacgaattgcctcaacttggcataagtgaaaacataccaaaaagttgattaccataaaccataccattagaagatggaatctccttctacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427738 |
gaatttcacacgaattgcctcaacttggcataagtgaaaacataccaaaaagttgattaccataaaccataccattagaagatggaatctccttctacaa |
23427837 |
T |
|
| Q |
119 |
acgatccacatgctcttagaagaagccacataaaattgaagcttgattgttttggaagcagagaatggtnnnnnnnnttatcaaagtatttgaagatgga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23427838 |
acgatccacatgctcttagaagaagccacataaaattgaagcttgattgttttggaagcagagaatggtaaaaaaaattatcaaagtatttgaagatgga |
23427937 |
T |
|
| Q |
219 |
taaatgagtgtactaaggttgaaaagaagaaaagaacaaaagggaaaataggggtttgtatttgttggcagaacggtttgttgtgtctctatcgaccgtg |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427938 |
taaatgggtgtactaaggttgaaaagaagaaaagaacaaaagggaaaataggggtttgtatttgttggcagaacggtttgttgtgtctctatcgaccgtg |
23428037 |
T |
|
| Q |
319 |
tgtgagtgtgtgttggagatttttattcatataggtgagtaagtaatgcaaggttcagagagtaagagacaaagaaaaagagactcaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23428038 |
tgtgagtgtgtgttggagatttttattcatataggtgagtaagtaatgcaaggttcagagagtaagagacaaagaaaaa-agactcaaa |
23428125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University