View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18086_high_4 (Length: 384)
Name: NF18086_high_4
Description: NF18086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18086_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 3913237 - 3912873
Alignment:
| Q |
1 |
cacagaagctataattagtaacgtaaggaggttaatgnnnnnnntactaaaaataacttacaaatatttcaagttaggaatctgagacaatgttgaagga |
100 |
Q |
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| T |
3913237 |
cacagaagctataattagtaacgtaaggaggttaatgaaaaaaatactaaaaataacttacaaatatttcaagttaggaatctgagacaatgttgaagga |
3913138 |
T |
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| Q |
101 |
attggtccaatcaactgattattcctcaaaaccctgagatacaataatatacaaggaaagatctgtcaggatctcttccgagaatcggtaaacaaaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
3913137 |
attggtccaatcaactgattattcctcaaaaccctgagatacaataatatacaaggaaagatctgtcaggatctattctgagaatcggtaaacaaaaatt |
3913038 |
T |
|
| Q |
201 |
tcaaaatcattgaactacgcttggaaaaactcacagaaattccaattgtttcagcttagaaattgaaaatggtatatccccccgaatttcgttaaacgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3913037 |
tcaaaatcattgaactacgcttggaaaaactcacagaaattccaattgtttcagcttagaaattgaaaatggtatatccccccgaatttcgttaaacgaa |
3912938 |
T |
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| Q |
301 |
aagtccctgagaacacaatgaaacagtcaagttcttaaatcactatgaggtctaagtacaaactg |
365 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3912937 |
aagtccctgagaacacaatgaaacagccaagttcttaaatcactatgaggtctaagtacaaactg |
3912873 |
T |
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