View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18086_high_6 (Length: 219)
Name: NF18086_high_6
Description: NF18086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18086_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 42854772 - 42854973
Alignment:
| Q |
6 |
tcttccgctatatagatattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaatt |
105 |
Q |
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| T |
42854772 |
tcttccgctatatagatattgcttaacttagaacttgtgaggccattctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaatt |
42854871 |
T |
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| Q |
106 |
agattactctctgtcaatggatgttcgacctgcttttgttttttgactcagatacaatataatatatgcataagatatat-atggtattctttctcattc |
204 |
Q |
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| T |
42854872 |
agattactctctgtcaatggatgttcgacctgcctttgttttttgactcagatacaatataatatgtgcataagatatatcatggtattctttctcattc |
42854971 |
T |
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| Q |
205 |
tt |
206 |
Q |
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|| |
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| T |
42854972 |
tt |
42854973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 42848214 - 42848390
Alignment:
| Q |
4 |
tgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaa |
103 |
Q |
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| T |
42848214 |
tgtcttccgctatatagttattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaa |
42848313 |
T |
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| Q |
104 |
ttagattactctctgtcaatggatgttcgacctgc-------ttttgttttttgactcagatacaatataatatatg |
173 |
Q |
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| T |
42848314 |
ttagattactctctgtctacgggtgttccacctgctttgttttttttttttttgactctgatacaatataatatatg |
42848390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 42856411 - 42856594
Alignment:
| Q |
4 |
tgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgt----ccttaag |
99 |
Q |
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| T |
42856411 |
tgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgattaggatcactgcagtatatatatatatcattgag |
42856510 |
T |
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| Q |
100 |
tcaattagattactctctgtcaatggatgttcgacctgcttttgttttttgactcagatacaatataatatatgcataagatat |
183 |
Q |
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| T |
42856511 |
tcaattacattactctttgcctattattgttccacctcctttggtttcttgattgagatacaatataataagtgcgtaagatat |
42856594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 42860478 - 42860564
Alignment:
| Q |
4 |
tgtcttccgctatatagatattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatat |
90 |
Q |
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| T |
42860478 |
tgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgattaggatcactgcagtatatat |
42860564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 42852887 - 42853084
Alignment:
| Q |
16 |
tatagatattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtatatatgtc----cttaagtcaattagatta |
111 |
Q |
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||||| ||||||||| ||| |||||| | |||||||||||||||||||||||| |||| ||| ||||| ||||||| ||||||| ||||||||| |
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| T |
42852887 |
tatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatttggattactacagtacatatgtcatgaattaagtcgattagatta |
42852986 |
T |
|
| Q |
112 |
ctctctgtcaatggatgttcgacctgcttt--tgttttttgactcagatacaatataatatatgcataagatatat-atggtattctttctcattctt |
206 |
Q |
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| T |
42852987 |
atctctgtctatgtgtgttccacatgctttggtttttttttacgaagatacgatataatatgtgcataagatatatcacgttattctttttcattctt |
42853084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 27095 - 27200
Alignment:
| Q |
103 |
attagattactctctgtcaatggatgttcgacctgcttttgtttttt-gactcagatacaatataatatatgcataagatatat-atggtattctttctc |
200 |
Q |
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|||||||||||| ||||| || ||||| ||||||||| ||||||| | | ||||||||| |||||| |||||||||||||| ||||||||||| || |
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| T |
27095 |
attagattactcactgtctattagtgttccacctgctttggtttttttgtccgagatacaatgtaatatgtgcataagatatatcgtggtattctttttc |
27194 |
T |
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| Q |
201 |
attctt |
206 |
Q |
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|||||| |
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| T |
27195 |
attctt |
27200 |
T |
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