View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18086_low_6 (Length: 267)
Name: NF18086_low_6
Description: NF18086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18086_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 26426502 - 26426271
Alignment:
| Q |
16 |
atgaaagcgtaacatctaaactcttttaaaataattatttattttgcatgatttattgcttaaggggtttagggtgttacaacactcgttaacaagactc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26426502 |
atgaaagcgtaacatctaaactcttttaaaataattatttattttgcatgatttattgcttaaggggtttagggtgttacaacactcgttaacaagactt |
26426403 |
T |
|
| Q |
116 |
catttttaatacaagaaaaccgtattttctaaactagaaaatacttgttttctttttcataaatggttcttatgatgatactagattagatcctcaagag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26426402 |
catttttaatacaagaaaaccgtattttctaaactagaaaatacttgttttctttttcataaatggttcttatgatgatactagattagatcctcaagag |
26426303 |
T |
|
| Q |
216 |
agaaaaaatgatataacataggtacgatactct |
248 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
26426302 |
a-aaaaaatgatataacataggtacgatactct |
26426271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 17909891 - 17909823
Alignment:
| Q |
28 |
catctaaactcttttaaaataattatttattttgcatgatttattgc-ttaaggggtttagggtgttaca |
96 |
Q |
| |
|
||||||||||||||| || ||||| | | ||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17909891 |
catctaaactcttttgaa-taattgtattatttgcatgatttattgcgttaaagggtttagggtgttaca |
17909823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 10116660 - 10116731
Alignment:
| Q |
24 |
gtaacatctaaactcttttaaaataattatttattttgcatgatttattgcttaaggggtttagggtgttaca |
96 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10116660 |
gtaacatctaaactgttg-aaaattattatttattttgcatgatttattgcttaagaggtttagggtgttaca |
10116731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 19979413 - 19979453
Alignment:
| Q |
54 |
ttattttgcatgatttattgcttaaggggtttagggtgtta |
94 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19979413 |
ttattatgcatgatttattgcttaaggggtttagggtgtta |
19979453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University