View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18087_low_1 (Length: 339)
Name: NF18087_low_1
Description: NF18087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18087_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 43472328 - 43472017
Alignment:
| Q |
12 |
atgaacataaataagattcacttgatctaagttttctaaacacataattcactaaattaagcactatacagttaaaaaagcacacaatataagaaataca |
111 |
Q |
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| T |
43472328 |
atgaacataaataagattcacttgatctaagttttctaaacacataattcactaaattaagcactatacagtaaaaaaagcacacaatataagaaataca |
43472229 |
T |
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| Q |
112 |
aatg-catctgtaaactaaacataaatgtagaaattcaaaactcacagatactagaaatgatatataaaatatgcataatgcttaccnnnnnnncttatt |
210 |
Q |
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|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43472228 |
aacggcatctgtaaaccaaacataaatgtagaaattcaaaactcacagatactagaaatgatatataaaatatgcataatgcttacctaaaaaacttatt |
43472129 |
T |
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| Q |
211 |
gtcttgagtactaatatggaagatctaaatgagttcaaagattgaattatggtgaaaattggtagtgcagaaaagtgagtagaaaatggattataattat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
43472128 |
gtcttgagtactaatatggaagatctaaatgagttcaaagattgaattatggtgaaaattggtagtgcagaaaagtgagtagaatatggcttataattat |
43472029 |
T |
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| Q |
311 |
taagtggtggat |
322 |
Q |
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|||||||||||| |
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| T |
43472028 |
taagtggtggat |
43472017 |
T |
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