View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_1 (Length: 588)
Name: NF18089_high_1
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 19 - 575
Target Start/End: Complemental strand, 42635469 - 42634913
Alignment:
| Q |
19 |
atagcctttgctagtgaagcttgcttgcaatgcagatgttctctgtgcagccaatcttgccatgtcgtgtccatttagtgagtacctatttgacgaactc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635469 |
atagcctttgctagtgaagcttgcttgcaatgcagatgttctctgtgcggccaatcttgccatgtcgtgtccatttagtgagtacctatttgacgaactt |
42635370 |
T |
|
| Q |
119 |
gatttctcatattgaggcctttgttttggtgcactcagagatctaactttggcctttgccgactctgtataagccatgtaacttgggtaatcagagtagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635369 |
gatttctcatattgaggcctttgttttggtgcactcagagatctaactttggcctttgccgactctgtataagccatgtaacttgggtaatcagagtagc |
42635270 |
T |
|
| Q |
219 |
ctctaatgtagcttcttgggccatcacttcttgtaggagtaaaaggacttatgttgtaaccatcatcttttgaagttgcagatgataaaagttgaggact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635269 |
ctctaatgtagcttcttgggccatcacttcttgtaggagtaaaaggacttctgttgtaaccatcatcttttgaagttgcagatgataaaagttgaggact |
42635170 |
T |
|
| Q |
319 |
attgtttgcggtgcaaaacgagttctcttcaacttcgttaagttttagtgggttgtaataagattgaacctcacaagatacactttgaccaaattgatga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635169 |
attgtttgcggtgcaaaacgagttctcttcaacttcgttaagttttagtgggttgtaataagattgaacctcacaagatacactttgaccaaattgatga |
42635070 |
T |
|
| Q |
419 |
gattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaagatgtttctgcgttttgtgttgatgtgttgtt |
518 |
Q |
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| T |
42635069 |
gattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaagatgtttctgcgttttgtgttgatgtgttgtt |
42634970 |
T |
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| Q |
519 |
ttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
575 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634969 |
ttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
42634913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 44096096 - 44096246
Alignment:
| Q |
19 |
atagcctttgctagtgaagcttgcttgcaatgcagatgttctctgtgcagccaatcttgccatgtcgtgtccatttagtgagtacctatttgacgaactc |
118 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
44096096 |
atagactttgctagtgaagcttgcttgcaatgtagatgttctctgtgcggccaatcttgccatgtcgtgtccattgagtgagtacctatttgacgaaccc |
44096195 |
T |
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| Q |
119 |
gatttctcatattgaggcctttgttttggtgcactcagagatctaactttg |
169 |
Q |
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| T |
44096196 |
gatttctcatattgaggcctttgttttggtgcacttagagatctaactttg |
44096246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 44096871 - 44096969
Alignment:
| Q |
164 |
actttggcctttgccgactctgtataagccatgtaacttgggtaatcagagtagcctctaatgtagcttcttgggccatcacttcttgtaggagtaaaa |
262 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||| |||||| ||||||||||||||| ||||||||| |
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| T |
44096871 |
actttggcttttgctgactctgtataagccatgtaacttgggtaattagagcagcctctaacgtagtttcttgagccatcacttcttgttggagtaaaa |
44096969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 46632762 - 46632691
Alignment:
| Q |
133 |
aggcctttgttttggtgcactcagagatctaactttggcctttgccgactctgtataagccatgtaacttgg |
204 |
Q |
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||||||||||||||||||||| | ||||||||||| || ||| || ||||||| ||||||||||||||| |
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| T |
46632762 |
aggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttgg |
46632691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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