View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_11 (Length: 417)
Name: NF18089_high_11
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Original strand, 28923372 - 28923776
Alignment:
| Q |
12 |
gagaagaagagtgttagttattagaaacaaaaatggtagaaaagtgaattgtaaaaacagagagttttatttcatacatagtggccattgatttgat--- |
108 |
Q |
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| T |
28923372 |
gagaagaagagtgttagttattagaaacaaaaatggtagaaaagtgaattgtaaaaacagagagttttatttcatacatagtggccattgatttgatttg |
28923471 |
T |
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| Q |
109 |
--gttgttccttcacagagtctgagtctgatctaat-----gtaaataatatgattcgagtgaattatcttagccttttgtttt-atagacgtggttggt |
200 |
Q |
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| T |
28923472 |
atgttgttcctttacagagtctgagtctgatctaatctaatgtaaataatatgattcgagtgaattatct-agccttttctttttatagacgtggttggt |
28923570 |
T |
|
| Q |
201 |
gagtgatcagcttcaccaccgcatgtcagcgatgacgcttgttttactttgaaattaaagtgggaactgtttatgttagtaatcaacaattttcacacc- |
299 |
Q |
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| T |
28923571 |
gagtgatcagcttcaccaccgcatgtcagcgatgacgcttgttttactttgaaattaaagtgggaactgtttatgttagtaatcaacaattttcacaccg |
28923670 |
T |
|
| Q |
300 |
-gtagccattgattatcatgttcctggactcaaatgtgtctacgttcaagtcatcgaacatttaataaccaacaccaattcatctaatttaaacttggaa |
398 |
Q |
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| T |
28923671 |
tgtagccattgattattatgttcctggactcaaatgtgtctacgttcaagtcatcgaacatttaataaccaataccaattcatctaatttaaacttggaa |
28923770 |
T |
|
| Q |
399 |
aattat |
404 |
Q |
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|||||| |
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| T |
28923771 |
aattat |
28923776 |
T |
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