View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_18 (Length: 349)
Name: NF18089_high_18
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 36860382 - 36860695
Alignment:
| Q |
19 |
agctggttctggtatgaatatgatcaacaattattatcacctatatggtagattctgctcattaacgattcatcgttttagttcttgaaattgtagggga |
118 |
Q |
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| T |
36860382 |
agctggttctggtatgaatatgatcaacaattattatcacctatatggtagattctgctcattaacggttcatcgttttagttcttgaaattgtagggga |
36860481 |
T |
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| Q |
119 |
cgaggaactccgtcgcctatatcaatgaaattgaaaattttcgatcatactagtcattttggatcagtcaatatagccgactaactgatctagaaaaaag |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36860482 |
cgaggaactctgtcgcctatatcaatgaaattgaaaattttcaatcatactagtcattttggatcagtcaatatagccgactaactgatctagaaaaaag |
36860581 |
T |
|
| Q |
219 |
actagcgtggtcgagaattttcatattcaaaagtcattttggagacctgccctatagttttaaggactaaattaatgatttactcgctcttaatcacacg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36860582 |
actagcgtggtcgagaattttcatattcaaaagtcattttggagacctgccctatagttttaaggactaaattaatgatttactcgttcttaatcacacg |
36860681 |
T |
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| Q |
319 |
attcgagcaaacag |
332 |
Q |
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|||||||||||||| |
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| T |
36860682 |
attcgagcaaacag |
36860695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 35029399 - 35029251
Alignment:
| Q |
37 |
tatgatcaacaattattatcacctatatggtagattctgctcattaacgattcatcgttttagttcttgaaattgtaggggacgaggaactccgtcgcct |
136 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| || |
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| T |
35029399 |
tatgatcaacaattattatcacctatatggtagaatctgctcattaacgattcatcgttttagtccttgaaattgtaggggacgaggaattccatcgtct |
35029300 |
T |
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| Q |
137 |
atatcaatgaaattgaaaattttcgatcatactagtcattttggatcag |
185 |
Q |
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| T |
35029299 |
aaatcaatgaaattgaaaattcttgattgtattagttattttggatcag |
35029251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 35029252 - 35029130
Alignment:
| Q |
210 |
agaaaaaagactagcgtggtcgagaattttcatattcaaaagtcattttggagacctgccctatagttttaaggactaaattaatgatttactcgctctt |
309 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||| |
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| T |
35029252 |
agaaaaaagactagtgtgatcgagaattttcatattcaaaagtcattttggagacctgccctattgttttaaggaataaattaatgatgcactcgttctt |
35029153 |
T |
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| Q |
310 |
aatcacacgattcgagcaaacag |
332 |
Q |
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|||||||| |||||||||||||| |
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| T |
35029152 |
aatcacactattcgagcaaacag |
35029130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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