View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18089_high_22 (Length: 306)
Name: NF18089_high_22
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_22 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 36923438 - 36923727
Alignment:
| Q |
17 |
aatttctattatttgtagacatatcttccaagtgaaacaccgacaacactacttaagtacagagaagaagagctagagactttaagaggtgatggaaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923438 |
aatttctattatttgtagacatatcttccaagtgaaactccgacaacactacttaagtacagagaagaagagctagagactttaagaggtgatggaaaag |
36923537 |
T |
|
| Q |
117 |
gcaagcttgaaaagtgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagg |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923538 |
gccagcttgaaaagtgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagg |
36923637 |
T |
|
| Q |
217 |
gtctgctgaatatccttaccctcgcaggggaagaactggcagagaacctgccaaatcaggttaggcttctatatttgttgttttgttctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36923638 |
gtctgctgaatatccttaccctcgcaggggaagaactggcagagaacctgccaaatcaggttaggcttctatttttgttgttttgttctt |
36923727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 47129223 - 47129164
Alignment:
| Q |
129 |
agtgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtc |
188 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||| ||||||| ||| ||||| |||| |
|
|
| T |
47129223 |
agtgggatagagtgtatgactatgcatgctacaatgacttgggaactccagataatggtc |
47129164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 46711840 - 46711718
Alignment:
| Q |
131 |
tgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatc |
230 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| || || |||||| ||||||||||||| |||||||| |
|
|
| T |
46711840 |
tgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatc |
46711741 |
T |
|
| Q |
231 |
cttaccctcgcaggggaagaact |
253 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46711740 |
cttaccctcgcaggggaagaact |
46711718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 36744008 - 36744130
Alignment:
| Q |
158 |
tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca |
257 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| || | | ||||||| ||||| ||||| ||| || ||| ||| || ||||| ||||||||||| ||| |
|
|
| T |
36744008 |
tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgca |
36744107 |
T |
|
| Q |
258 |
gagaacctgccaaatcaggttag |
280 |
Q |
| |
|
|| |||| ||||| |||||||| |
|
|
| T |
36744108 |
gaaaaccgaccaaaacaggttag |
36744130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University