View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18089_high_3 (Length: 533)
Name: NF18089_high_3
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 26809841 - 26809299
Alignment:
| Q |
1 |
gtattaatattagtcatttagttgtctgtctcaatcttagcaagaaagtttaggtggttgcggtctgtgcttattttcccttttctcttcattaactatt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26809841 |
gtattaatattagttatttagttgcctgtctcaatcttagcaagaaagtttaggtggttgcggtctgtgcttattttcccttttctctccattaactatt |
26809742 |
T |
|
| Q |
101 |
tcacatacacaaatcttgcttattttgaatagtgaagtgaagacagatagaggaataggaaaaataaattaagttaatgatataatattagttacaattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26809741 |
tcacatacacaaatcttgcttattttgaatagtgaagtgaagacagatagaggaataggaaaaataaattaagttaatgatataatagtagttacaattg |
26809642 |
T |
|
| Q |
201 |
ctaaatgttaccattgcatcaaggtatgtttggccaaccctctcagagctcagttggtatgggcagtcaaagtaatgttcttgtggagaagtggaaaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26809641 |
ctaaatgttaccattgcatcaaggtatgtttggccaaccctctcagagctcagttggtatgggcagtcaaagtaatgttcttgtggagaagtggaaaaga |
26809542 |
T |
|
| Q |
301 |
ttacttgacctgaaaagggaaca-cgcaaaattcaagttctcaaca--------ttcaaagtgttttcgacgaggaaaagaaaatatag-ggagattaaa |
390 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||||| |||||||| || |||||| | |||||||| |
|
|
| T |
26809541 |
ttacttgacctggaaagggaacaccgggaaattcaagttctcaacattcaaagtttcaaagtgttttcgatgaggaaaaaaatatatagagaagattaaa |
26809442 |
T |
|
| Q |
391 |
taactccttttataacatgagatattaccattacggataactcgtaatccacaatcaccaacattggcaatcttcagattcccattcttttctagcatag |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26809441 |
taactccttttataacatgagatattaccattacggataactcgtaatccacaatcaccaacattggcaatcttcagattcccattcttttctagcatag |
26809342 |
T |
|
| Q |
491 |
caacgatgcttcacagaatcacagacaagaaattgctgaggca |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26809341 |
caacgatgcttcacagaatcacagacaagaaattgttgaggca |
26809299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 111 - 422
Target Start/End: Complemental strand, 40842072 - 40841760
Alignment:
| Q |
111 |
aaatcttgcttattttgaatagtgaagtgaagacagatagaggaataggaaaaataaattaagttaatgatataatattagttacaattgctaaatgtta |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
40842072 |
aaatcttgcttattttgaagagtgaagtgaagacagatagaggagtaggaaaaggaaattaagttaatgatataatagtacttacaattgctaaatgtta |
40841973 |
T |
|
| Q |
211 |
ccattgcatcaaggtatgtttggccaaccctctcagagctcagttggtatgggcagtcaaagtaatgttcttgtggagaagtggaaaagattacttgacc |
310 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40841972 |
ccgttgcatcgaggtatgtttggccaaccctctcagagctcagttggtatgggcagtcaaagtaatgttcttgtggagaagtggaaaagattacttgacc |
40841873 |
T |
|
| Q |
311 |
tgaaaagggaaca-cgcaaaattcaagttctcaacattcaaagtgttttcgacgaggaaaagaaaatatagggagattaaataactccttttataacatg |
409 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
40841872 |
tgaaaagggaacaccgagaaattcaagttctcaacattcaaagtgttttcgacgaggaaaaaaatatatagggagattaaataactcctttcataacatg |
40841773 |
T |
|
| Q |
410 |
agatattaccatt |
422 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40841772 |
agatattaccatt |
40841760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 40842192 - 40842094
Alignment:
| Q |
16 |
atttagttgtctgtctcaatcttagcaagaaagtttaggtggttgcggtctgtgcttattttcccttttctcttcattaactatttcacatacacaaat |
114 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
40842192 |
atttagttgtctgtctaaatctgagcatgaaagtttaggtggttgctttctgtgcatattttcccttttctcttcaatgactatttcacatacacaaat |
40842094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 472 - 533
Target Start/End: Complemental strand, 40841764 - 40841703
Alignment:
| Q |
472 |
ccattcttttctagcatagcaacgatgcttcacagaatcacagacaagaaattgctgaggca |
533 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
40841764 |
ccattcttttccagcatagcaatgatgcttcacagaatcacagacaagaaatggttgaggca |
40841703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University