View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_30 (Length: 276)
Name: NF18089_high_30
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 37383397 - 37383638
Alignment:
| Q |
21 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37383397 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
37383496 |
T |
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| Q |
121 |
atttggatggttaactgatccaggtgatgaggctcggctgctacaccgtgacacattctctcttgattaaaaagacttactgaaatatggannnnnnnnn |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37383497 |
atttggatggttaactgatccaggtgatgaggctcggctgctacaccgtgacacgttctctcttgattaaaaagacttactgaaatatggattttttaac |
37383596 |
T |
|
| Q |
221 |
nnnnnnnngaatttataggttcaaatgaaggtccacacaggt |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
37383597 |
ttttttttgaatttataggttcaaatgaaggtccacacaggt |
37383638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 37376030 - 37376223
Alignment:
| Q |
21 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
120 |
Q |
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||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37376030 |
ttcagttcattaaattctgaatcagggacatggctgcagctaatttgataggagcaaaaggtttaaggggaagttcctggcctgacatggacatgctacc |
37376129 |
T |
|
| Q |
121 |
atttggatggttaactgatccaggtgatgaggctcggctgcta---caccgtgacacattctctcttgattaaaaagacttactgaaatatgga |
211 |
Q |
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| T |
37376130 |
atttggatggttaactgacccaggtgatgagactcgggtgctagacgaccgtgacgcattctctcttgattaaaaagacttactgaaatatgga |
37376223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 37409186 - 37409046
Alignment:
| Q |
21 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
120 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || ||||| ||||| || ||||||||||||| |
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| T |
37409186 |
ttcagctcattaaattctgaatcagggacttagctacaactaatatgatcggagcaaaaggtttaaaggggagttcatggccagatttggacatgctacc |
37409087 |
T |
|
| Q |
121 |
atttggatggttaactgatccaggtgatgaggctcggctgc |
161 |
Q |
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| T |
37409086 |
atttggatggctaactgatgcaggtgatttggctcggctgc |
37409046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 37361211 - 37361338
Alignment:
| Q |
21 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||| | ||| |||||||| |||| |||||||| |
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| T |
37361211 |
ttcagttcattaaattctgaatcagggacatggctgcagctaatttgataggagcaaaaggtttaaaagggaattcatggcctgatttggatatgctacc |
37361310 |
T |
|
| Q |
121 |
atttggatggttaactgatccaggtgat |
148 |
Q |
| |
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|||||||||| |||||||| |||||||| |
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| T |
37361311 |
atttggatggctaactgatgcaggtgat |
37361338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 37366851 - 37366724
Alignment:
| Q |
21 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||| |||||||| ||||||||||||||||||||||||| | ||| |||||||| |||| |||||||| |
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| T |
37366851 |
ttcagttcattaaaatctgaatcagggacatggctgcagctaatttgataggagcaaaaggtttaaaagggaattcatggcctgatttggatatgctacc |
37366752 |
T |
|
| Q |
121 |
atttggatggttaactgatccaggtgat |
148 |
Q |
| |
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|||||||||| |||||||| |||||||| |
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| T |
37366751 |
atttggatggctaactgatgcaggtgat |
37366724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 37376241 - 37376273
Alignment:
| Q |
230 |
aatttataggttcaaatgaaggtccacacaggt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
37376241 |
aatttataggttcaaatgaaggtccacacaggt |
37376273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 41229132 - 41228943
Alignment:
| Q |
21 |
ttcagttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctacc |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
41229132 |
ttcagttcattaaattctgaaccagggacttagctacagctaatatgataggagcaaaaggtttaaaagggagttcatggcctgatttggacatgctacc |
41229033 |
T |
|
| Q |
121 |
atttggatggttaactgatccaggtgatgaggctcggctgctacaccgtgacacattctctcttgattaaaaagacttactgaaatatgga |
211 |
Q |
| |
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|||||||||| ||||||| |||||| ||||||||||||||| || |||| ||||||||||||||| ||||| |||||||||||||||| |
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| T |
41229032 |
atttggatggctaactgacaaaggtgacgaggctcggctgctagacagtgaagcattctctcttgatt-aaaaggcttactgaaatatgga |
41228943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 39244893 - 39245008
Alignment:
| Q |
24 |
agttcattaaattctgaatcagggacttagctacagctaatatgataggagcaaaaggtttaaaaggaagttcctggcctgacatggacatgctaccatt |
123 |
Q |
| |
|
|||| ||| |||| ||||||||||| || | |||||||||||||||||||||||| |||||| || | ||| ||||| || |||||||||||||||| |
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| T |
39244893 |
agtttatttaattatgaatcagggatttttcaacagctaatatgataggagcaaaaagtttaatggggaattcatggccggatttggacatgctaccatt |
39244992 |
T |
|
| Q |
124 |
tggatggttaactgat |
139 |
Q |
| |
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||||||| |||||||| |
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| T |
39244993 |
tggatggctaactgat |
39245008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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