View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_36 (Length: 253)
Name: NF18089_high_36
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 36530841 - 36531078
Alignment:
| Q |
16 |
attctgcatcaaaacaagaccaaaccaaactaatgtattcaaacctaaaccaaacaaaacttatgtaatgaacaacataggtcaaggctttttcaaaagt |
115 |
Q |
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| T |
36530841 |
attctgcatcaaaacaagaccaaaccaaacttatgtattcaaacctaaaccaaacaaaacttatgtaatgaacaacataggtcaaggctttttcaaaagt |
36530940 |
T |
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| Q |
116 |
atatttagctaaaaggacaagcgtttagcccatccgtaaacctttaaacctaacaaaaccgtcctactgaagaatatattgaccctatgagcttacttag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36530941 |
atatttagctaaaaggacaagcgtttagcccatccgaaaacctttaaacctaacaaaaccgtcctactgaagtatatattgaccctatgagcttacttag |
36531040 |
T |
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| Q |
216 |
tgatagccacatcacttatctaaagaccttagcacaaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36531041 |
tgatagccacatcacttatctaaagaccttagcacaaa |
36531078 |
T |
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