View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_43 (Length: 228)
Name: NF18089_high_43
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36934518 - 36934313
Alignment:
| Q |
1 |
tgattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaacccaagagctatattgtaccttaagttccaa |
100 |
Q |
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| T |
36934518 |
tgattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaacccaagagctatattgtaccttaagttccaa |
36934419 |
T |
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| Q |
101 |
gccaagatgcttcctccgcgaaaaagatgaaagtctaagctgccattaggcatgtattcgtatatcaggataagttcattcttcttgtggcaccaaccag |
200 |
Q |
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| T |
36934418 |
ggcaagatgcttcctccgcgaaaaagatgaaagtctaagctgccattaggcatgtattcgtatatcaggataagttcattcttcttgtggcaccaaccag |
36934319 |
T |
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| Q |
201 |
tgagtt |
206 |
Q |
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|||||| |
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| T |
36934318 |
tgagtt |
36934313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 36931369 - 36931281
Alignment:
| Q |
2 |
gattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaacccaagagctatattgtacct |
90 |
Q |
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| T |
36931369 |
gatttaatgtccctgtgaagcacacactgttcccattcttcctgtaggtaaagcaatgctgaagccaagcccaatgctatattatacct |
36931281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 47871640 - 47871573
Alignment:
| Q |
2 |
gattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaa |
69 |
Q |
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| T |
47871640 |
gattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
47871573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28279267 - 28279212
Alignment:
| Q |
1 |
tgattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagca |
56 |
Q |
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|||||| || |||||||| | ||||||||||||||||||||| || |||||||||| |
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| T |
28279267 |
tgatttaatatccctatgtaccacacatttttcccattcttcatgtaaataaagca |
28279212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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