View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_45 (Length: 221)
Name: NF18089_high_45
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_45 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 54720884 - 54721104
Alignment:
| Q |
1 |
tctatcatgtacctaattaatttctatttatacctcatgtaacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacg |
100 |
Q |
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| T |
54720884 |
tctatcatgtacctaattaatttctatttatacctcatgtaacaatcggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacg |
54720983 |
T |
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| Q |
101 |
gttaaactagcttagttttgtcaaaatattactttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaatg |
200 |
Q |
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| T |
54720984 |
gttaaactagcttagttttgtcaaaatattactttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtgttataaaatg |
54721083 |
T |
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| Q |
201 |
aagtgatatgaagcctatttt |
221 |
Q |
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| T |
54721084 |
aagtgatatgaagcctatttt |
54721104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 54714013 - 54714184
Alignment:
| Q |
50 |
ctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattactttctcacgcaaagcca |
149 |
Q |
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| T |
54714013 |
ctggtcaattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattattttctcaagcaaagcca |
54714112 |
T |
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| Q |
150 |
cattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctatttt |
221 |
Q |
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| T |
54714113 |
cattaattcacttattttttcgtttaaggaaaaatgttgtgttataaattgaagtgatatgaagcctatttt |
54714184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 54680248 - 54680457
Alignment:
| Q |
3 |
tatcatgtacctaattaatttctatttatacctcatgtaacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggt |
102 |
Q |
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| T |
54680248 |
tatcatgcaactaattagtttctatttattctttatataacaattggccggtcaattaattaaccatcatatttaacgccatgc----ttcccacacggt |
54680343 |
T |
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| Q |
103 |
taaactagcttagttttgtcaaaatattact---ttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaat |
199 |
Q |
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| T |
54680344 |
taaactagcttacttttgtcaaaatattactaatttctcacgcaaagccacactaattcatttattttttcgtttatggaaaaatgtggtgttataaatt |
54680443 |
T |
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| Q |
200 |
gaagtgatatgaag |
213 |
Q |
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| T |
54680444 |
gaagtgataagaag |
54680457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 54726646 - 54726731
Alignment:
| Q |
72 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
157 |
Q |
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| T |
54726646 |
tatttgacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctaacgcaaagtcacattaatt |
54726731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 5302512 - 5302597
Alignment:
| Q |
72 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
157 |
Q |
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| T |
5302512 |
tattttacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctcacgcaaagtcacattaatt |
5302597 |
T |
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