View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_high_6 (Length: 479)
Name: NF18089_high_6
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 7432939 - 7432496
Alignment:
| Q |
19 |
gcaaggtagtataaatctttgtgaaagcaattcaaatttgattcatgattgaccaatatataacaagtgatatttttgttgttaaggactttcaaatgaa |
118 |
Q |
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| T |
7432939 |
gcaaggtagtataaatctttgttaaagcaattcaaacttgattcatgattgacagatatataacaagtgatatttttgttgttaaggactttcaaatgaa |
7432840 |
T |
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| Q |
119 |
aaaattgttagcgttagttaaatctcttgacaagtggtatctgtgacatggnnnnnnntgtatcggcctatttagggtatattttactttgaaatttgaa |
218 |
Q |
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| T |
7432839 |
aaaattgtta----tagttaaatctcttgacaagtggtatttgtgacatggaaaaaaatgtatcggcctatttagggtttattttactttgaaatttgaa |
7432744 |
T |
|
| Q |
219 |
agagtatgtgtataacttaagatagagaattgggaaaatacttgatgatttaagttttagtgactttagtatatttaattgataaacgaatgattgattn |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7432743 |
agagtatgtgtataactaaagatagagaattgggaaaatacttgatgatttaagttttagtgacgttagtatatttaattgataaacgaatgattgatt- |
7432645 |
T |
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| Q |
319 |
nnnnnnnngatagagataaagtcacgaaactcaaaatcatgtccaaccggtccaa-tgatccatccaatatatgggagggtacccgtcccatatacacat |
417 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7432644 |
aaaaaaaagatagagataaagtcaagaaactcaaaatcatgtccaaccggtccaattgatccatccaatatatgggagggtacccgtcccatatacacat |
7432545 |
T |
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| Q |
418 |
ttctcacaactcatcaaccataataaccctgtttcattttattcatctc |
466 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7432544 |
ttctcaaaactcatcaaccataataaccctgtttcattttattcatctc |
7432496 |
T |
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