View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18089_low_1 (Length: 773)
Name: NF18089_low_1
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 14 - 756
Target Start/End: Complemental strand, 40086078 - 40085317
Alignment:
| Q |
14 |
cataggctgaatcgatgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattgacaaatataaactttgaccttaatatcttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40086078 |
cataggctgaatcgatgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattaacaaatataaactttgaccttaatatcttc |
40085979 |
T |
|
| Q |
114 |
aagaatatattaactatacttgtattgtatttcatgataaaaaa-cctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
40085978 |
aagaatatattaactatacttgtattgtatttcatgataaaaaaacctgagataaaattataggtcctccttgtgatgcatacagtttctcttgcttcat |
40085879 |
T |
|
| Q |
213 |
gaggtcgacaatcttagtggtgaatcgcttcatttcagcctgaagacaaagtttactgtcaagtgaactcagtccaaggaaaaaagcatgaagcactgga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40085878 |
gaggtcgacaatcttagtggtgaatcgcttcatttcaacctgaagacaaagtttcctgtcaagtgaactcagtccaaggacaaaagcatgaagcactgga |
40085779 |
T |
|
| Q |
313 |
ctgaaggttaacttgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagttaaag |
412 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085778 |
ctgaaggttaacttaccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagttaaag |
40085679 |
T |
|
| Q |
413 |
ccctcaattagacatgaacacccccgaaatataatacacataaattaccaaacattacccatagttccattcagaacaaacatatggaccaatccggaga |
512 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085678 |
ccctcaattagacatgaacaccctcgaaatataatacacataaattaccaaactttacccatagttccattcagaacaaacatatggaccaatccggaga |
40085579 |
T |
|
| Q |
513 |
tgcacatatagacctgcctcagctactgctttcacaaatttcaccaaatccttcctcccatcaaaatcatactgc-aaaatccatttcatttcaatgaat |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40085578 |
tgcacatatagacctgcctcagctactgctttcacaaatttcaccaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaat |
40085479 |
T |
|
| Q |
612 |
taagatagcctttcttagcttatagtagatcaagatcatgtttggataaaatacttaat-----------------taagtgcttattctatttacaaaa |
694 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40085478 |
taagatagactttcttagcttatagtagatcaagatcatatttggataaaatacttaattaagtgcttataacatataagtgcttattctatttacaaaa |
40085379 |
T |
|
| Q |
695 |
gattttagagtcatattgttttcatatagttaatatgtttgattatctatcttggagagatt |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40085378 |
gattttagagtcatattgttttcatatagttaatatgtttcattatctatcttggagagatt |
40085317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 28 - 626
Target Start/End: Complemental strand, 40078268 - 40077659
Alignment:
| Q |
28 |
atgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattgacaaatataaactttgaccttaatatcttcaagaatatattaac |
127 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||| |||||| ||||||||||| |||||||| | || |||||||||||||| ||| ||||||||||| |
|
|
| T |
40078268 |
atgtttccatactcattttcaatctggcattagaaagcacaaatactctcacattaacaaatatgagctctgaccttaatatctacaaaaatatattaac |
40078169 |
T |
|
| Q |
128 |
tata--cttgtat-------tgtatttcatgataaaaaacctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcatgaggtc |
218 |
Q |
| |
|
|||| ||| | ||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |
|
|
| T |
40078168 |
tatatacttcaaaaagaccatgtatttaatgattaaaaacctgagataaaattataggtcctccttgtgatgcatacagtttctcttgcttcatgagatc |
40078069 |
T |
|
| Q |
219 |
gacaatcttagtggtgaatcgcttcatttcagcctgaagacaaagtttactgtcaagtgaactcag-tccaaggaaaaaagcatgaagcactggactgaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||| ||| |||||||||| | |||| |
|
|
| T |
40078068 |
gacaatcttagcggtgaatcgcttcatttcggcctgaagacaaagtttcctgtcaagtgaactcagatttaaggacaaatgcatgaagcaacagggtgaa |
40077969 |
T |
|
| Q |
318 |
ggttaacttgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagttaaagccctc |
417 |
Q |
| |
|
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40077968 |
ggttagcctaccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagttaaagccctc |
40077869 |
T |
|
| Q |
418 |
aattagacatgaacacccccgaaatataatacacataaattaccaaacattacccatagttccattcagaacaaacatatggaccaatccggagatgcac |
517 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||| ||| ||||||| |||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
40077868 |
aattagacatgaacaccacagaaaaataatacacagaaaggaccaaactttacccgtagttccattcagcacacacatatggaccgatccggagatgcac |
40077769 |
T |
|
| Q |
518 |
atatagacctgcctcagctactgctttcacaaatttcaccaaatccttcctcccatcaaaatcatactgc-aaaatccatttcatttcaatgaattaaga |
616 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
40077768 |
atatagtcctgcctcagccactgcctttacaaatttcactaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattataa |
40077669 |
T |
|
| Q |
617 |
tagcctttct |
626 |
Q |
| |
|
||| |||||| |
|
|
| T |
40077668 |
tagtctttct |
40077659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 674
Target Start/End: Complemental strand, 40060190 - 40059529
Alignment:
| Q |
14 |
cataggctgaatcgatgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattgacaaatataaactttgaccttaatat--ct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||| |||||| ||||||||||| |||||||| ||||||||||||||||| || |
|
|
| T |
40060190 |
cataggctgaatcgatgtctccatactcattttcaatctggcaatagag--cacaaatactctcacattaacaaatattaactttgaccttaatatgtct |
40060093 |
T |
|
| Q |
112 |
tcaagaatatattaactatacttgtattgtatttcatgataaaaaa-cctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttc |
210 |
Q |
| |
|
||| |||||| | ||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
40060092 |
acaaaaatatactcgctata-----attgtatttagtgataaaaaaacctgagataaaattataggtcctccttgtgatgcataaagtttctcttgcttc |
40059998 |
T |
|
| Q |
211 |
atgaggtcgacaatcttagtggtgaatcgcttcatttcagcctgaagacaaagtttactgtcaagtgaactcag-tccaaggaaaaaagcatgaagcact |
309 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||| | |||||| |
|
|
| T |
40059997 |
atgagatcgacaatcttagcggtgaatctcttcatttcggcctgaagacaaaatttcttggcaagtgaactcagatttaaggacaaaagtaggaagcaac |
40059898 |
T |
|
| Q |
310 |
ggactgaaggttaact-tgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagtt |
408 |
Q |
| |
|
|| | | ||||| || | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40059897 |
agagttatggttacctctaccttaaatggttcattatcagttcggaacttaatccccggaatgaagtgaagccaaagagggaaaccactgttaagaagtt |
40059798 |
T |
|
| Q |
409 |
aaagccctcaattagacatgaacacccccgaaatataatacacataaattaccaaaca----ttacccatagttccattcagaacaaacatatggaccaa |
504 |
Q |
| |
|
||||||||| |||||| |||||||||| |||| ||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
40059797 |
aaagccctcgattaga--tgaacaccccagaaaaatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccga |
40059700 |
T |
|
| Q |
505 |
tccggagatgcacatatagacctgcctcagctactgctttcacaaatttcaccaaatccttcctcccatcaaaatcatactgc-aaaatccatttcattt |
603 |
Q |
| |
|
| ||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40059699 |
tgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcactaaatccttcctcccatcaaaatcatactgcaaaaatccatttcattt |
40059600 |
T |
|
| Q |
604 |
caatgaattaagatagcctttcttagcttatagtagatcaagatcatgtttggataaaatacttaattaag |
674 |
Q |
| |
|
|| ||||||| |||| |||||| | |||| |||||||||| | |||||||||||||| ||||| |||||| |
|
|
| T |
40059599 |
cagtgaattataatagtctttctaaccttacagtagatcaacaccatgtttggataaactactttattaag |
40059529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 756
Target Start/End: Complemental strand, 40059469 - 40059417
Alignment:
| Q |
703 |
agtcatattgttttcatatagttaatatgtttgattatctatcttggagagatt |
756 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
40059469 |
agtcatattgttttcatataattattat-tttcattatctatcttggagagatt |
40059417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 314 - 430
Target Start/End: Original strand, 35052648 - 35052764
Alignment:
| Q |
314 |
tgaaggttaacttgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagttaaagc |
413 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
35052648 |
tgaaggttaccttaccttaaatggttcattgtctgtttggaacctaatccctggaatgaagtgaatccaaagaggttaaccactgttaagaagttaaagc |
35052747 |
T |
|
| Q |
414 |
cctcaattagacatgaa |
430 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
35052748 |
cctcaattagaaatgaa |
35052764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 288 - 436
Target Start/End: Original strand, 12735421 - 12735570
Alignment:
| Q |
288 |
aaggaaaaaagcatgaagca-ctggactgaaggttaacttgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaaga |
386 |
Q |
| |
|
||||| |||||||||| ||| | ||| ||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12735421 |
aaggacaaaagcatgaggcagcgggagtgaaggttacattaccttaaatggttcattgtctatttggaacttaatccctggaatgaagtgaatccaaaga |
12735520 |
T |
|
| Q |
387 |
gggaaaccactgtcaagaagttaaagccctcaattagacatgaacacccc |
436 |
Q |
| |
|
|| ||||||| | |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12735521 |
ggttaaccactcttaagaagttaaagccctcaattagaaatgaagacccc |
12735570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 288 - 436
Target Start/End: Original strand, 12798248 - 12798397
Alignment:
| Q |
288 |
aaggaaaaaagcatgaagca-ctggactgaaggttaacttgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaaga |
386 |
Q |
| |
|
||||| |||||||||| ||| | ||| ||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12798248 |
aaggacaaaagcatgaggcagcgggagtgaaggttacattaccttaaatggttcattgtctatttggaacttaatccctggaatgaagtgaatccaaaga |
12798347 |
T |
|
| Q |
387 |
gggaaaccactgtcaagaagttaaagccctcaattagacatgaacacccc |
436 |
Q |
| |
|
|| ||||||| | |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12798348 |
ggttaaccactcttaagaagttaaagccctcaattagaaatgaagacccc |
12798397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 314 - 446
Target Start/End: Complemental strand, 53322866 - 53322734
Alignment:
| Q |
314 |
tgaaggttaacttgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgtcaagaagttaaagc |
413 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||| | | ||||||||||||| |
|
|
| T |
53322866 |
tgaaggttaccttaccttaaatggttcattgtcgatttggaacttaatccctggaatgaagtgaatacaaagaggttaaccaatcttaagaagttaaagc |
53322767 |
T |
|
| Q |
414 |
cctcaattagacatgaacacccccgaaatataa |
446 |
Q |
| |
|
||||||||||| ||||| ||||| |||| |||| |
|
|
| T |
53322766 |
cctcaattagaaatgaagaccccagaaaaataa |
53322734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 22015577 - 22015666
Alignment:
| Q |
156 |
aacctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcatgaggtcgacaatcttagtggtgaatcgcttcat |
245 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| || |||||||||||||| | ||||||||||||| ||| || |||||||| |
|
|
| T |
22015577 |
aacctgagataaaattataggtcctccttgtgatgcatagaggttctcttgcttcatcatatcgacaatcttagcggtaaaccgcttcat |
22015666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 22015826 - 22015910
Alignment:
| Q |
467 |
ttacccatagttccattcagaacaaacatatggaccaatccggagatgcacatatagacctgcctcagctactgctttcacaaat |
551 |
Q |
| |
|
|||||| || |||||||||| ||| ||||||||||| ||||||||||||||||||| |||||| | |||||||| ||||||||| |
|
|
| T |
22015826 |
ttacccgtaattccattcagcacacacatatggaccgatccggagatgcacatataaacctgctgctgctactgccttcacaaat |
22015910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 22015670 - 22015743
Alignment:
| Q |
326 |
tgccttaaatggttcattgtcagttcggaacttaatccctggaatgaagtgaagccaaagagggaaaccactgt |
399 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||| || | ||| || || | |||||| ||||||||||||| |
|
|
| T |
22015670 |
tgccttgaatggttcattattagttcggaacttaattccagcaataaaatgcaaccaaagggggaaaccactgt |
22015743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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