View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_11 (Length: 478)
Name: NF18089_low_11
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 4509586 - 4509151
Alignment:
| Q |
17 |
atcaaccactatgaaacactcacatagacactagagacgtaactggcatgtagacacttgaaatttcttcaatgtgaagtatagggtttcataggccaat |
116 |
Q |
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| T |
4509586 |
atcaaccactacgaaacactcacatagacactagagacgtaactggcacgtagacacttgaaatttcttcaatgtgaagtatagggtttcataggccaat |
4509487 |
T |
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| Q |
117 |
gattttcatttttcagtttcatgaatcatttttgaattgaaatttcgttaattacacaaacgaaagagaaagctacaatttgaggactaattagtgattc |
216 |
Q |
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| T |
4509486 |
gattttcatttttcagtttcatgaatcatttttgaattgaaatttcgttaattacacaaacgaaagagaaagctacaatttgaggactaattagtgattc |
4509387 |
T |
|
| Q |
217 |
actttaaagagaaagctacgttacaatatgaatatgatgattatgattatgattatgattacaaattacaagtcacataacacacctagcaacagtaaca |
316 |
Q |
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| T |
4509386 |
actttaaagagaaagctacgttacaatatgaatatgatgattatg------------attacaaattacaagtcacataacacacctagcaacagtaaca |
4509299 |
T |
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| Q |
317 |
ctccaaggagtaacaaactgatcctcagtggctctatcctcaccataaacatcccgaacactgccggcaatggtgggattatcatcaatgtcagccaccg |
416 |
Q |
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| T |
4509298 |
ctccaaggagtaacaaactgatcctcagtggctctatcctcaccataaacatcccgaacaccgccggcaatggtgggattatcatcaatgtcagccaccg |
4509199 |
T |
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| Q |
417 |
tggaactagaaacattacttgtctccatgcaatgctgatgggtctgtg |
464 |
Q |
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| T |
4509198 |
tggaactagaaacattacttgtctccatgcaatgctgatgggtctgtg |
4509151 |
T |
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Back To:
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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 43435195 - 43435264
Alignment:
| Q |
300 |
acctagcaacagtaacactccaaggagtaacaaactgatcctcagtggctctatcctcaccataaacatc |
369 |
Q |
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| T |
43435195 |
acctagcaacagaaacactccaaggagtcacaaagtgatcctcagtggccttatcctcgccataaacatc |
43435264 |
T |
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