View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_13 (Length: 455)

Name: NF18089_low_13
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_13
NF18089_low_13
[»] chr5 (6 HSPs)
chr5 (14-438)||(29280962-29281376)
chr5 (216-286)||(17258869-17258939)
chr5 (237-294)||(13604827-13604884)
chr5 (166-224)||(31030198-31030260)
chr5 (256-293)||(32890607-32890644)
chr5 (175-224)||(41016132-41016181)
[»] chr8 (14 HSPs)
chr8 (315-438)||(6471356-6471482)
chr8 (216-291)||(43368681-43368756)
chr8 (192-275)||(20672742-20672823)
chr8 (237-275)||(3600735-3600773)
chr8 (237-275)||(14339602-14339640)
chr8 (216-294)||(14949880-14949958)
chr8 (237-274)||(4281581-4281618)
chr8 (237-286)||(30389134-30389183)
chr8 (240-284)||(779049-779093)
chr8 (215-275)||(3254238-3254298)
chr8 (192-224)||(7878554-7878586)
chr8 (238-286)||(10358614-10358662)
chr8 (249-293)||(10690035-10690079)
chr8 (192-220)||(29056063-29056091)
[»] chr1 (21 HSPs)
chr1 (237-294)||(10199386-10199443)
chr1 (192-284)||(601031-601122)
chr1 (216-292)||(25479595-25479671)
chr1 (215-286)||(3924637-3924708)
chr1 (259-293)||(11584546-11584580)
chr1 (241-275)||(47917275-47917309)
chr1 (237-286)||(4576840-4576889)
chr1 (241-286)||(38266446-38266491)
chr1 (179-219)||(44115978-44116019)
chr1 (192-224)||(4200199-4200231)
chr1 (239-275)||(5276330-5276366)
chr1 (239-275)||(5886991-5887027)
chr1 (241-293)||(6262059-6262111)
chr1 (150-194)||(7120072-7120116)
chr1 (166-194)||(7137105-7137133)
chr1 (192-224)||(7218142-7218174)
chr1 (192-224)||(25006102-25006134)
chr1 (192-224)||(27738248-27738280)
chr1 (238-286)||(29635383-29635431)
chr1 (192-224)||(37272654-37272686)
chr1 (192-224)||(44032067-44032099)
[»] chr4 (10 HSPs)
chr4 (216-294)||(2996587-2996665)
chr4 (236-286)||(17223022-17223072)
chr4 (241-278)||(8469371-8469408)
chr4 (237-274)||(28300297-28300334)
chr4 (192-224)||(13949912-13949944)
chr4 (192-224)||(18630650-18630682)
chr4 (192-224)||(21952931-21952963)
chr4 (237-273)||(24747354-24747390)
chr4 (192-224)||(25434528-25434560)
chr4 (237-293)||(28614787-28614843)
[»] chr7 (10 HSPs)
chr7 (237-294)||(27708775-27708832)
chr7 (237-293)||(7244715-7244771)
chr7 (239-286)||(34035954-34036002)
chr7 (192-275)||(39539778-39539861)
chr7 (237-296)||(46082071-46082130)
chr7 (241-278)||(9423588-9423625)
chr7 (237-286)||(15740397-15740446)
chr7 (238-282)||(21247962-21248006)
chr7 (192-224)||(23918927-23918959)
chr7 (237-265)||(43648275-43648303)
[»] chr3 (14 HSPs)
chr3 (206-275)||(36200100-36200169)
chr3 (165-224)||(20669561-20669621)
chr3 (237-275)||(3044256-3044294)
chr3 (237-275)||(5391914-5391952)
chr3 (237-275)||(25925777-25925815)
chr3 (237-275)||(39602207-39602245)
chr3 (237-275)||(52440659-52440697)
chr3 (237-274)||(33883748-33883785)
chr3 (241-294)||(37273173-37273226)
chr3 (241-286)||(43116427-43116472)
chr3 (237-286)||(47513688-47513737)
chr3 (238-283)||(52619039-52619084)
chr3 (222-274)||(5166343-5166395)
chr3 (192-224)||(33405235-33405267)
[»] chr6 (18 HSPs)
chr6 (237-293)||(9027613-9027669)
chr6 (222-274)||(30604916-30604968)
chr6 (198-294)||(32577964-32578060)
chr6 (237-275)||(6647422-6647460)
chr6 (241-295)||(22743520-22743574)
chr6 (237-275)||(31624125-31624163)
chr6 (237-286)||(34882406-34882456)
chr6 (237-286)||(1575930-1575979)
chr6 (241-286)||(4080955-4081000)
chr6 (237-286)||(20368166-20368215)
chr6 (150-224)||(22742288-22742368)
chr6 (237-278)||(29296289-29296330)
chr6 (150-191)||(31337945-31337986)
chr6 (241-286)||(33887869-33887914)
chr6 (192-224)||(281916-281948)
chr6 (241-293)||(7931705-7931757)
chr6 (192-224)||(21959698-21959730)
chr6 (192-224)||(29274297-29274329)
[»] chr2 (5 HSPs)
chr2 (241-291)||(10285899-10285949)
chr2 (241-275)||(29316772-29316806)
chr2 (241-302)||(43065420-43065481)
chr2 (192-224)||(11513868-11513900)
chr2 (192-224)||(33944575-33944607)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 438
Target Start/End: Original strand, 29280962 - 29281376
Alignment:
Q  14 agataccggacaagaccctaatatgcatgtctcttgataataatttgagaaaatgaattaatcaactgtaattttacatgtgtcaatatcggacactgca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  29280962 agataccggacaagaccctaatatgcatgtctcttgataataatttgagaaaatgaattaatcaactttaattttacatatgtcaatgtcggacactgca 29281061  T
Q  114 catactattaatcagatatatcggtgctacagaggtgcttattgtatacgtacttatatataaactatttttataacaaaaataaagtcaatttgttttc 213  Q
    ||||||||||||||||  ||| ||||||           ||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29281062 catactattaatcagaagtattggtgct-----------tatcgtataagtacttatatataaactatttttataacaaaaataaagtcaacttgttttc 29281150  T
Q  214 atataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttca-tgagctctcataagtagactttatatt 312  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  29281151 atataaactatcctcaagatcgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcaatgagctctcagaagtagactttatatt 29281250  T
Q  313 agattgataaattttaattagtcaatctaaacatgtccttaatccataatgggaatttgttggtgtttcaggttagtggaccagagacagtggaacttaa 412  Q
     ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29281251 ggattgataaattttaatcagtcaatctaaacatgttcttaatccacaatgggaatttgttggtgtttcaggttagtggaccagagacagtggaacttaa 29281350  T
Q  413 tgtgaatatgcattgtgaggcttgtg 438  Q
    ||||||||||||||||||||||||||    
T  29281351 tgtgaatatgcattgtgaggcttgtg 29281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 17258939 - 17258869
Alignment:
Q  216 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||| ||||||| |||||   ||||||||||| |||||| | ||||||||||||||||||  |||||||||    
T  17258939 ataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcat 17258869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 13604884 - 13604827
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    |||||||||||||||||| ||| |||| |||||||||||  | ||||||| |||||||    
T  13604884 atgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctc 13604827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 31030260 - 31030198
Alignment:
Q  166 cttatatataaactatttttataacaaa----aataaagtcaatttgttttcatataagctat 224  Q
    ||||| ||||| ||||||||||||||||    ||||||||||| ||||| |||||||||||||    
T  31030260 cttatgtataagctatttttataacaaatttaaataaagtcaagttgttatcatataagctat 31030198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 32890644 - 32890607
Alignment:
Q  256 aacttatgaacatgtcataaattattttcatgagctct 293  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  32890644 aacttataaacatgtcataaattattttcattagctct 32890607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 41016132 - 41016181
Alignment:
Q  175 aaactatttttataacaaaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||| |||| |||||||||| ||||  ||||||||||||||||||    
T  41016132 aaactatttctatagcaaaaataaattcaaactgttttcatataagctat 41016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 6471482 - 6471356
Alignment:
Q  315 attgataaattttaattagtcaatctaaacatgtccttaatccataatgggaatttgttggtgtttcaggttagtggaccaga---gacagtggaactta 411  Q
    |||||||||||| ||||||||||| |||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||    ||||| |||||||    
T  6471482 attgataaatttcaattagtcaatataaatatgtccttaatctacaatgggaatatgttggtgtttcaggttagtggaccagaaacaacagtagaactta 6471383  T
Q  412 atgtgaatatgcattgtgaggcttgtg 438  Q
    ||||||  |||||||||||||||||||    
T  6471382 atgtgaccatgcattgtgaggcttgtg 6471356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 43368756 - 43368681
Alignment:
Q  216 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagct 291  Q
    ||||||| |||| |||||| ||||||||||||||||||| | || ||||||||||||||| || ||||||| ||||    
T  43368756 ataagctgtcctaaagagttcatgaaaataagttgaaaatagctaatgaacatgtcataagttgttttcataagct 43368681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 20672742 - 20672823
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||  ||||||  |||||||||||||  ||||   ||||||||||| |||||| | ||||||||||||||||||    
T  20672742 aaaataaagtcaaactgtttt--tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 3600773 - 3600735
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  3600773 atgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 14339640 - 14339602
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  14339640 atgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 14949880 - 14949958
Alignment:
Q  216 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    |||||||||||| |||||   ||  ||||||| |||||| | |||||| ||||||||||| |||||||||| |||||||    
T  14949880 ataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctc 14949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 4281581 - 4281618
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcata 274  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  4281581 atgaaaataagatgaaaacaacttatgaacatgtcata 4281618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 30389134 - 30389183
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||||| |||||| |||||||||||||||||| |  |||||||||    
T  30389134 atgaaaataagctgaaaacaacttatgaacatgtcattagctattttcat 30389183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 779093 - 779049
Alignment:
Q  240 aaaataagttgaaaagaacttatgaacatgtcataaattattttc 284  Q
    |||||||| |||||| |||||||||||||||||||| || |||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttc 779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 3254238 - 3254298
Alignment:
Q  215 tataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||  |||||| ||  ||||||| |||||| | ||||||||||||||||||    
T  3254238 tataagctatcctatagagtgtatagaaataagctgaaaacagcttatgaacatgtcataa 3254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 7878586 - 7878554
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  7878586 aaaataaagtcaaattgttttcatataagctat 7878554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10358614 - 10358662
Alignment:
Q  238 tgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||| | |||||  ||||||||||||||||||| ||||||||||    
T  10358614 tgaaaataaatcgaaaacgacttatgaacatgtcataagttattttcat 10358662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 10690035 - 10690079
Alignment:
Q  249 tgaaaagaacttatgaacatgtcataaattattttcatgagctct 293  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||||    
T  10690035 tgaaaataacttatgaacatatcataagttatttacatgagctct 10690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 29056091 - 29056063
Alignment:
Q  192 aaaataaagtcaatttgttttcatataag 220  Q
    |||||||||||||||||||||||||||||    
T  29056091 aaaataaagtcaatttgttttcatataag 29056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 10199443 - 10199386
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    ||||||||||| |||||| ||||||||||||||||||||  |||||||||||| ||||    
T  10199443 atgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctc 10199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 601031 - 601122
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttc 284  Q
    ||||||||||||| ||||||||||||| ||||||||  |||||  ||||||||||| |||||| | ||||  |||||||||||| || |||||    
T  601031 aaaataaagtcaagttgttttcatatatgctatcctggagagtttatgaaaataagctgaaaatagctta-caacatgtcataagttgttttc 601122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 25479595 - 25479671
Alignment:
Q  216 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctc 292  Q
    ||||||||||||  ||||   ||||||||||| |||||| |||| |||||||||||||||  ||||||||| |||||    
T  25479595 ataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagctc 25479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 3924637 - 3924708
Alignment:
Q  215 tataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||||||| ||||||  ||| |||||||  ||||| ||||||| ||||| ||||||||| |||||||    
T  3924637 tataagctatcctgaagagtttatggaaataagccgaaaacaacttataaacatttcataaattgttttcat 3924708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 11584546 - 11584580
Alignment:
Q  259 ttatgaacatgtcataaattattttcatgagctct 293  Q
    |||||||||||||||||||||||||||| ||||||    
T  11584546 ttatgaacatgtcataaattattttcataagctct 11584580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 47917275 - 47917309
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||| ||||||||||||||||||||    
T  47917275 aaataagttgaaaacaacttatgaacatgtcataa 47917309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 4576840 - 4576889
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||||| |||| | ||||||| ||||||||||||| |||||||||    
T  4576840 atgaaaataagctgaacacaacttataaacatgtcataaactattttcat 4576889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 38266491 - 38266446
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||||    
T  38266491 aaataagttgaaaacaaattatgaacatgtcgtaagttattttcat 38266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 44116019 - 44115978
Alignment:
Q  179 tatttttataacaaaa-ataaagtcaatttgttttcatataa 219  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  44116019 tatttttataacaaaagataaagtcaaattgttttcatataa 44115978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 4200199 - 4200231
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  4200199 aaaataaagtcaagttgttttcatataagctat 4200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 5276330 - 5276366
Alignment:
Q  239 gaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  5276330 gaaaataacttgaaaacaacttatgaacatgtcataa 5276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 5887027 - 5886991
Alignment:
Q  239 gaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  5887027 gaaaataagctgaaaacaacttatgaacatgtcataa 5886991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 6262059 - 6262111
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 293  Q
    |||||||||||||| | |||||||||||||||||| || || |||| ||||||    
T  6262059 aaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctct 6262111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 7120072 - 7120116
Alignment:
Q  150 gcttattgtatacgtacttatatataaactatttttataacaaaa 194  Q
    |||||| ||||| || |||||||||||||||||| ||||||||||    
T  7120072 gcttatggtataagtgcttatatataaactatttatataacaaaa 7120116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 7137133 - 7137105
Alignment:
Q  166 cttatatataaactatttttataacaaaa 194  Q
    |||||||||||||||||||||||||||||    
T  7137133 cttatatataaactatttttataacaaaa 7137105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 7218174 - 7218142
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  7218174 aaaataaagtcaaattgttttcatataagctat 7218142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 25006134 - 25006102
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  25006134 aaaataaagtcaaattgttttcatataagctat 25006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 27738280 - 27738248
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  27738280 aaaataaagtcaaattgttttcatataagctat 27738248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 29635383 - 29635431
Alignment:
Q  238 tgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||||||||| |||||| ||||||| |||||||||||| || |||||||    
T  29635383 tgaaaataagctgaaaacaacttataaacatgtcataacttgttttcat 29635431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 37272686 - 37272654
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    |||||||||||||| ||||||||||||||||||    
T  37272686 aaaataaagtcaatctgttttcatataagctat 37272654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 44032099 - 44032067
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  44032099 aaaataaagtcaaattgttttcatataagctat 44032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 2996587 - 2996665
Alignment:
Q  216 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    |||||||||| |  |||| | |||||||||||||||||| | |||||| ||||||||||| || ||||||| |||||||    
T  2996587 ataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctc 2996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 17223072 - 17223022
Alignment:
Q  236 catgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||| |||||||||||||| | ||||||||||||||||||| |||||||||    
T  17223072 catggaaataagttgaaaacagcttatgaacatgtcataaactattttcat 17223022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 8469408 - 8469371
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaatt 278  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  8469408 aaataagctgaaaacaacttatgaacatgtcataaatt 8469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 28300334 - 28300297
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcata 274  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  28300334 atgaaaataagttgaaaacaacttaagaacatgtcata 28300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 13949944 - 13949912
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  13949944 aaaataaagtcaaattgttttcatataagctat 13949912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 18630650 - 18630682
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||||| |||||||||||||||||    
T  18630650 aaaataaagtcaattggttttcatataagctat 18630682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 21952931 - 21952963
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  21952931 aaaataaagtcaaattgttttcatataagctat 21952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 24747354 - 24747390
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcat 273  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24747354 atgaaaataagctgaaaacaacttatgaacatgtcat 24747390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 25434560 - 25434528
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    |||||||||||||| ||||||||||||||||||    
T  25434560 aaaataaagtcaatatgttttcatataagctat 25434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 28614843 - 28614787
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 293  Q
    ||||||||||| |||||||| |||||| | |||||||||||| ||| ||| ||||||    
T  28614843 atgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagctct 28614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 27708832 - 27708775
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    |||||||||||||||||| | |||||||||| ||  |||||||||||||| |||||||    
T  27708832 atgaaaataagttgaaaatagcttatgaacacgttgtaaattattttcataagctctc 27708775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 7244715 - 7244771
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 293  Q
    ||||||||||| |||||| ||||||||| ||||||||||||| ||| ||| ||||||    
T  7244715 atgaaaataagctgaaaacaacttatgagcatgtcataaattgtttccatcagctct 7244771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 34035954 - 34036002
Alignment:
Q  239 gaaaataagttgaaaagaacttatgaac-atgtcataaattattttcat 286  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  34035954 gaaaataagttgaaaacaacttatgaacaatgtcataagttattttcat 34036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 39539861 - 39539778
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||| |||| |||||||||||||||||||||||  |||    | |||||||| |||||| | |||||| |||||||||||    
T  39539861 aaaataaattcaaattgttttcatataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataa 39539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 46082071 - 46082130
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctcat 296  Q
    ||||||||||| |||||| ||||||||  |||||||||| || ||||||| |||||||||    
T  46082071 atgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcat 46082130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 9423625 - 9423588
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaatt 278  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  9423625 aaataagctgaaaacaacttatgaacatgtcataaatt 9423588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 15740446 - 15740397
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  15740446 atgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcat 15740397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 21247962 - 21248006
Alignment:
Q  238 tgaaaataagttgaaaagaacttatgaacatgtcataaattattt 282  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||    
T  21247962 tgaaaataagcttaaaacaacttatgaacatgtcataagttattt 21248006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 23918927 - 23918959
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  23918927 aaaataaagtcaaattgttttcatataagctat 23918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 43648275 - 43648303
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaa 265  Q
    |||||||||||||||||||||||||||||    
T  43648275 atgaaaataagttgaaaagaacttatgaa 43648303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 36200100 - 36200169
Alignment:
Q  206 ttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||| |||||||||||||  ||||  |||| ||||||| |||||| |||||||| |||||||||||    
T  36200100 ttgttttcttataagctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataa 36200169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 20669561 - 20669621
Alignment:
Q  165 acttatatataaactatttttataacaaaaata-aagtcaatttgttttcatataagctat 224  Q
    |||||| ||||| |||||| ||||||||||||| |||| || |||||||||||||||||||    
T  20669561 acttatgtataagctatttctataacaaaaatacaagttaaattgttttcatataagctat 20669621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 3044294 - 3044256
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  3044294 atgaaaataagttgaaaacagcttatgaacatgtcataa 3044256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 5391914 - 5391952
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  5391914 atgaaaataagttgaaaacagcttatgaacatgtcataa 5391952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 25925777 - 25925815
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  25925777 atgaaaataagttgaaaacagcttatgaacatgtcataa 25925815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 39602245 - 39602207
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| || |||||||||||||||||    
T  39602245 atgaaaataagttgaaaacaatttatgaacatgtcataa 39602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 52440697 - 52440659
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  52440697 atgaaaattagttgaaaacaacttatgaacatgtcataa 52440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 33883785 - 33883748
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcata 274  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  33883785 atgaaaataagctgaaaacaacttatgaacatgtcata 33883748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 37273173 - 37273226
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    |||||||||||||| |||||||| ||||||||||| || ||| ||| |||||||    
T  37273173 aaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 43116472 - 43116427
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||||||||||||||| |||||||| |||| || |||||||    
T  43116472 aaataagttgaaaagaacttaagaacatgttataagttgttttcat 43116427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 47513688 - 47513737
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||||||||| ||||||| ||||||||||| |||||||| || |||||||    
T  47513688 atgaaaataaattgaaaacaacttatgaacgtgtcataacttgttttcat 47513737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 52619039 - 52619084
Alignment:
Q  238 tgaaaataagttgaaaagaacttatgaacatgtcataaattatttt 283  Q
    |||||||||| |||||| | ||||||||||||||||||||| ||||    
T  52619039 tgaaaataaggtgaaaatagcttatgaacatgtcataaattgtttt 52619084  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 5166343 - 5166395
Alignment:
Q  222 tatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcata 274  Q
    |||| ||||||| | ||||||||||| |||||| | |||||||||||||||||    
T  5166343 tatcttcaagagcgtatgaaaataagatgaaaacagcttatgaacatgtcata 5166395  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 33405267 - 33405235
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    |||||||||| ||||||||||||||||||||||    
T  33405267 aaaataaagttaatttgttttcatataagctat 33405235  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 9027613 - 9027669
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 293  Q
    ||||||||||| |||||| |||||||| ||||||||||| |||||| ||| ||||||    
T  9027613 atgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 30604916 - 30604968
Alignment:
Q  222 tatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcata 274  Q
    |||||| ||||| | ||| |||||||||||||||||||||||||||| |||||    
T  30604916 tatcctgaagagagtatggaaataagttgaaaagaacttatgaacatttcata 30604968  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 32578060 - 32577964
Alignment:
Q  198 aagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 294  Q
    ||||||| ||||| |||||||||||||||| |||||   ||| ||||||| |||||| | || | | ||||||||||| || ||||||| |||||||    
T  32578060 aagtcaaattgttctcatataagctatcctgaagagcatatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctc 32577964  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 6647422 - 6647460
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  6647422 atgaaaataagttgaaaacatcttatgaacatgtcataa 6647460  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 22743520 - 22743574
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctca 295  Q
    ||||||| |||||| | ||||||||||||| |||| || ||||||||||||||||    
T  22743520 aaataagctgaaaacagcttatgaacatgtaataagttgttttcatgagctctca 22743574  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 31624125 - 31624163
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataa 275  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  31624125 atgaaaataagttgaaaacagcttatgaacatgtcataa 31624163  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 34882456 - 34882406
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaac-atgtcataaattattttcat 286  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  34882456 atgaaaataagtggaaaacaacttatgaacaatgtcataacttattttcat 34882406  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 1575930 - 1575979
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    ||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  1575930 atgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcat 1575979  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 4080955 - 4081000
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||||||||||||| |||||||||||||| ||||| || |||||||    
T  4080955 aaataagttgaaaacaacttatgaacatggcataagttgttttcat 4081000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 20368215 - 20368166
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||||||||||||||||  | |||||||||||||||||| || |||||||    
T  20368215 atgaaaataagttgaaactagcttatgaacatgtcataagttgttttcat 20368166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 22742288 - 22742368
Alignment:
Q  150 gcttattgtatacgtacttatatataaactatttttataacaaa------aataaagtcaatttgttttcatataagctat 224  Q
    |||||| ||||| || ||||| ||||| |||||| |||||||||      ||||||||||| |||||||||||||||||||    
T  22742288 gcttatcgtataagttcttatctataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 29296330 - 29296289
Alignment:
Q  237 atgaaaataagttgaaaagaacttatgaacatgtcataaatt 278  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  29296330 atgaaaataagctgaaaataacttatggacatgtcataaatt 29296289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 31337945 - 31337986
Alignment:
Q  150 gcttattgtatacgtacttatatataaactatttttataaca 191  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  31337945 gcttattgtataagtacttatgtataaactatttctataaca 31337986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 33887869 - 33887914
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 286  Q
    |||||||||||||| ||||| ||||||||||||||  |||||||||    
T  33887869 aaataagttgaaaacaacttgtgaacatgtcataagctattttcat 33887914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 281948 - 281916
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  281948 aaaataaagtcaacttgttttcatataagctat 281916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 7931757 - 7931705
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 293  Q
    ||||||| |||||| |||||| ||||||||||||| || ||||||| ||||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctct 7931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 21959698 - 21959730
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    |||||||||||||||||||| ||||||||||||    
T  21959698 aaaataaagtcaatttgtttgcatataagctat 21959730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 29274329 - 29274297
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  29274329 aaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 10285899 - 10285949
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagct 291  Q
    |||||||||||||| | |||||| ||||||||||| |||||||||| ||||    
T  10285899 aaataagttgaaaacagcttatggacatgtcataagttattttcataagct 10285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 29316806 - 29316772
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataa 275  Q
    ||||||| |||||||||||||||||||||||||||    
T  29316806 aaataagctgaaaagaacttatgaacatgtcataa 29316772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 43065481 - 43065420
Alignment:
Q  241 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctcataagtag 302  Q
    ||||||| |||||| || ||||| ||||||||||| || ||||||| |||||||| ||||||    
T  43065481 aaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctcacaagtag 43065420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 11513868 - 11513900
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  11513868 aaaataaagtcaaattgttttcatataagctat 11513900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 33944575 - 33944607
Alignment:
Q  192 aaaataaagtcaatttgttttcatataagctat 224  Q
    ||||||||||||| |||||||||||||||||||    
T  33944575 aaaataaagtcaaattgttttcatataagctat 33944607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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