View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_14 (Length: 452)

Name: NF18089_low_14
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_14
NF18089_low_14
[»] chr6 (10 HSPs)
chr6 (26-147)||(31069843-31069963)
chr6 (302-414)||(31045551-31045665)
chr6 (63-142)||(31045823-31045902)
chr6 (17-138)||(31080494-31080614)
chr6 (41-129)||(31035374-31035462)
chr6 (355-414)||(31056620-31056679)
chr6 (56-119)||(31110404-31110467)
chr6 (47-108)||(31027001-31027062)
chr6 (367-410)||(31096480-31096523)
chr6 (384-413)||(31035350-31035379)
[»] scaffold0018 (1 HSPs)
scaffold0018 (91-155)||(170853-170917)
[»] scaffold0202 (2 HSPs)
scaffold0202 (355-414)||(5180-5239)
scaffold0202 (24-83)||(5095-5154)


Alignment Details
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 31069963 - 31069843
Alignment:
Q  26 tctaaactcatgcataaggttacaagaaaagaagaaacttcaatatttaaaggaaatactaatccaattccaaatccaacaagaagcaggaaggtttatc 125  Q
    |||||||||||||| |||||||||||| | | ||||||| |||||| | ||| ||||||||||||||||||||||||||||||   ||||||||| ||||    
T  31069963 tctaaactcatgca-aaggttacaagagatgcagaaactccaatatctgaagcaaatactaatccaattccaaatccaacaagtttcaggaaggtctatc 31069865  T
Q  126 tctcacacacacatttatttca 147  Q
    ||||||||||||||| ||||||    
T  31069864 tctcacacacacattaatttca 31069843  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 31045665 - 31045551
Alignment:
Q  302 tatgaattgtcaaaatattcatatataaatcagaa--ttctgattcaaatagttgttatatacaggcataagtgtctcacatgttctctctagtaagatg 399  Q
    ||||||||||| |||||||||||||||||||||||  || || |||||||||||  |||||| ||| ||| ||||| |||||| ||||||||||||||||    
T  31045665 tatgaattgtcgaaatattcatatataaatcagaaaattttggttcaaatagttactatatatagggataggtgtcgcacatgatctctctagtaagatg 31045566  T
Q  400 attcattcaagtttc 414  Q
    |||||||||||||||    
T  31045565 attcattcaagtttc 31045551  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 31045902 - 31045823
Alignment:
Q  63 cttcaatatttaaaggaaatactaatccaattccaaatccaacaagaagcaggaaggtttatctctcacacacacattta 142  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||    
T  31045902 cttcaatatataaaggaaatactaatccaattccaaatccaacaagttgcaggaaggtttatctctctctcacacattta 31045823  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 31080614 - 31080494
Alignment:
Q  17 agttttcagtctaaactcatgcataaggttacaagaaaagaagaaacttcaatatttaaaggaaatactaatccaattccaaatccaacaagaagcagga 116  Q
    |||||| ||||||||||||||    ||||||||||||| ||||||||| |||| ||| ||||||| | | ||||||||||||||||||||||  | | ||    
T  31080614 agttttaagtctaaactcatgtggtaggttacaagaaa-gaagaaactccaatttttgaaggaaacaatcatccaattccaaatccaacaagctgtacga 31080516  T
Q  117 aggtttatctctcacacacaca 138  Q
    ||||||||||||| ||||||||    
T  31080515 aggtttatctctctcacacaca 31080494  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 31035462 - 31035374
Alignment:
Q  41 aaggttacaagaaaagaagaaacttcaatatttaaaggaaatactaatccaattccaaatccaacaagaagcaggaaggtttatctctc 129  Q
    |||||||||||| ||||||||||| ||| ||  ||||||||||||||| |||||||||||||||||||   ||||||||| ||||||||    
T  31035462 aaggttacaagagaagaagaaactccaaaatccaaaggaaatactaattcaattccaaatccaacaagtttcaggaaggtctatctctc 31035374  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 31056679 - 31056620
Alignment:
Q  355 ttatatacaggcataagtgtctcacatgttctctctagtaagatgattcattcaagtttc 414  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||    
T  31056679 ttatatacaggcataagtgtctcacatgttctctctgataagattattcatttaagtttc 31056620  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 31110467 - 31110404
Alignment:
Q  56 gaagaaacttcaatatttaaaggaaatactaatccaattccaaatccaacaagaagcaggaagg 119  Q
    ||||| ||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31110467 gaagatactccaatatctaaaggaaatactaattcaattccaaatccaacaagcagcaggaagg 31110404  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 31027062 - 31027001
Alignment:
Q  47 acaagaaaagaagaaacttcaatatttaaaggaaatactaatccaattccaaatccaacaag 108  Q
    |||||| ||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||    
T  31027062 acaagagaagaagaaactccaatatttgaagcaaatattaatccaattccaaatccaacaag 31027001  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 31096480 - 31096523
Alignment:
Q  367 ataagtgtctcacatgttctctctagtaagatgattcattcaag 410  Q
    |||||| ||||||||||||||||||  |||||||||||||||||    
T  31096480 ataagtatctcacatgttctctctacaaagatgattcattcaag 31096523  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 31035379 - 31035350
Alignment:
Q  384 tctctctagtaagatgattcattcaagttt 413  Q
    ||||||||||||||||||||||||||||||    
T  31035379 tctctctagtaagatgattcattcaagttt 31035350  T

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Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 170853 - 170917
Alignment:
Q  91 aattccaaatccaacaagaagcaggaaggtttatctctcacacacacatttatttcatacacttt 155  Q
    ||||||||||||||||||  |||| |||||||||||||| | |||| ||||||||||||||||||    
T  170853 aattccaaatccaacaagctgcagaaaggtttatctctctcgcacatatttatttcatacacttt 170917  T

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Target: scaffold0202 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 5180 - 5239
Alignment:
Q  355 ttatatacaggcataagtgtctcacatgttctctctagtaagatgattcattcaagtttc 414  Q
    ||||||| ||||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  5180 ttatatataggcataagtgtctcatgtgttctctctacaaagatgattcattcaagtttc 5239  T

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Target: scaffold0202; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 5095 - 5154
Alignment:
Q  24 agtctaaactcatgcataaggttacaagaaaagaagaaacttcaatatttaaaggaaata 83  Q
    |||||||||||||||| |||||||||  | |||||||||||  ||||||||||| |||||    
T  5095 agtctaaactcatgcacaaggttacagtagaagaagaaactcgaatatttaaagaaaata 5154  T

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