View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_15 (Length: 439)

Name: NF18089_low_15
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_15
NF18089_low_15
[»] chr3 (12 HSPs)
chr3 (4-136)||(14073690-14073822)
chr3 (4-136)||(14149381-14149513)
chr3 (212-320)||(14073898-14074010)
chr3 (4-136)||(13608818-13608948)
chr3 (213-256)||(14149678-14149721)
chr3 (274-319)||(14149707-14149752)
chr3 (389-423)||(14074073-14074107)
chr3 (10-42)||(6010917-6010949)
chr3 (10-42)||(6016163-6016195)
chr3 (389-423)||(13609169-13609203)
chr3 (13-42)||(6018867-6018896)
chr3 (84-136)||(2900405-2900457)
[»] chr7 (8 HSPs)
chr7 (4-134)||(9982995-9983127)
chr7 (4-126)||(7961066-7961188)
chr7 (4-111)||(1118922-1119029)
chr7 (24-110)||(1126151-1126237)
chr7 (271-320)||(7960933-7960982)
chr7 (271-320)||(9983202-9983251)
chr7 (271-320)||(1118774-1118823)
chr7 (217-253)||(9983180-9983216)
[»] chr2 (3 HSPs)
chr2 (4-122)||(31402123-31402241)
chr2 (271-320)||(31401986-31402035)
chr2 (213-253)||(31402021-31402061)
[»] chr6 (5 HSPs)
chr6 (76-136)||(16215173-16215233)
chr6 (76-136)||(16217826-16217886)
chr6 (76-136)||(16227393-16227453)
chr6 (213-253)||(16215053-16215093)
chr6 (213-253)||(16217706-16217746)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 14073690 - 14073822
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataat 103  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  14073690 atctcaaacaaaataataaattaatttacatattatttatttatgaacaaaattattaatgtggtaacagagttttgatcaaccctcttcttgaaataat 14073789  T
Q  104 acacacccatactaacaagatagatagaaaaca 136  Q
    |||||||||||||||||||||||||||||||||    
T  14073790 acacacccatactaacaagatagatagaaaaca 14073822  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 14149381 - 14149513
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataat 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  14149381 atctcaaacaaaataataaattaatttacatattatttatttaggaacaaaactattaatgtgacaacagagtttcgatcaaccctcttcttgaaataat 14149480  T
Q  104 acacacccatactaacaagatagatagaaaaca 136  Q
     ||||||| |||||||||||||| || ||||||    
T  14149481 tcacacccttactaacaagataggtaaaaaaca 14149513  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 14073898 - 14074010
Alignment:
Q  212 atttgtatgaccattaaccgaattaaagataattatataattttttgaccgnnnnnnnn----gacaattatataattcttattcttaaatttcttactg 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||    
T  14073898 atttgtatgaccattaaccgaattaaagacaattatataattttttgaccaaaaaaataaaaagacaattatataattcttattcttaaatttcttactg 14073997  T
Q  308 tttttattaaata 320  Q
    |||||||||||||    
T  14073998 tttttattaaata 14074010  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 13608818 - 13608948
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataat 103  Q
    ||||| || ||||||||||||||||| |  |||||||||| ||||||||||||||||||| ||  || |||||||||||||||||| ||||| |||||||    
T  13608818 atctcaaacaaaataataaattaattga--tattatttatataggaacaaaattattaatgtgagaatagagtttcgatcaacccttttcttaaaataat 13608915  T
Q  104 acacacccatactaacaagatagatagaaaaca 136  Q
    ||||||   | |||||||||| | |||||||||    
T  13608916 acacacaattgctaacaagattggtagaaaaca 13608948  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 14149678 - 14149721
Alignment:
Q  213 tttgtatgaccattaaccgaattaaagataattatataattttt 256  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  14149678 tttgtatgaccattgaccgaattaaagataattatataattttt 14149721  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 14149707 - 14149752
Alignment:
Q  274 aattatataattcttattcttaaatttcttactgtttttattaaat 319  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  14149707 aattatataatttttattcttaaatttcttactgtctttattaaat 14149752  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 14074073 - 14074107
Alignment:
Q  389 gactgcaatattagttaatatatttaatggttact 423  Q
    |||||||||||||||||||||||||||||||||||    
T  14074073 gactgcaatattagttaatatatttaatggttact 14074107  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 6010949 - 6010917
Alignment:
Q  10 aagaaaataataaattaatttacatattattta 42  Q
    |||||||||||||||||||||||||||||||||    
T  6010949 aagaaaataataaattaatttacatattattta 6010917  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 6016195 - 6016163
Alignment:
Q  10 aagaaaataataaattaatttacatattattta 42  Q
    |||||||||||||||||||||||||||||||||    
T  6016195 aagaaaataataaattaatttacatattattta 6016163  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 13609169 - 13609203
Alignment:
Q  389 gactgcaatattagttaatatatttaatggttact 423  Q
    |||||||||||||||||||||||||||| ||||||    
T  13609169 gactgcaatattagttaatatatttaatagttact 13609203  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 6018896 - 6018867
Alignment:
Q  13 aaaataataaattaatttacatattattta 42  Q
    ||||||||||||||||||||||||||||||    
T  6018896 aaaataataaattaatttacatattattta 6018867  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 2900405 - 2900457
Alignment:
Q  84 aaccctcttcttgaaataatacacacccatactaacaagatagatagaaaaca 136  Q
    ||||||||| |||||||||| |||| || ||||||||||||||  ||||||||    
T  2900405 aaccctcttattgaaataattcacatccttactaacaagatagcaagaaaaca 2900457  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 9982995 - 9983127
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataat 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||| |||||| | ||||||||||||||||||    
T  9982995 atctcaaacaaaataataaattaatttacatattatttatttaccaacaaaattattaatgtgacaacagagattcgataacccctcttcttgaaataat 9983094  T
Q  104 --acacacccatactaacaagatagatagaaaa 134  Q
      |||||||| ||||||||||||||||| ||||    
T  9983095 tcacacacccttactaacaagatagataaaaaa 9983127  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 7961188 - 7961066
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataat 103  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||    
T  7961188 atctcaaacaaaataataaattaatttacatattatttatttacgaacaaaattattaatatgacaacagagttttgataaccccgcttcttgaaataat 7961089  T
Q  104 acacacccatactaacaagatag 126  Q
     |||||||   ||||||||||||    
T  7961088 tcacaccctagctaacaagatag 7961066  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 1119029 - 1118922
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataat 103  Q
    ||||| || ||||||||||||||||||||||||||||||| || |||||||||||||||| || ||| |||| |||||| | |||||| |||||||||||    
T  1119029 atctcaaacaaaataataaattaatttacatattatttatatacgaacaaaattattaatgtgacaatagagattcgatgacccctctacttgaaataat 1118930  T
Q  104 acacaccc 111  Q
     |||||||    
T  1118929 tcacaccc 1118922  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 1126237 - 1126151
Alignment:
Q  24 ttaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccctcttcttgaaataatacacacc 110  Q
    ||||||||||||||||||||||  ||||||||||||||||  | |||||||| |||||| | |||| | ||||||||||| ||||||    
T  1126237 ttaatttacatattatttattttcgaacaaaattattaatgagacaacagagattcgataacccctgtacttgaaataattcacacc 1126151  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 7960982 - 7960933
Alignment:
Q  271 gacaattatataattcttattcttaaatttcttactgtttttattaaata 320  Q
    ||||||||||||||||||| ||||||||||||||||  |||||| |||||    
T  7960982 gacaattatataattcttactcttaaatttcttactaattttatgaaata 7960933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 9983202 - 9983251
Alignment:
Q  271 gacaattatataattcttattcttaaatttcttactgtttttattaaata 320  Q
    ||||||||||||||||||| || ||||||||||||| | |||||||||||    
T  9983202 gacaattatataattcttactcataaatttcttactatgtttattaaata 9983251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 1118823 - 1118774
Alignment:
Q  271 gacaattatataattcttattcttaaatttcttactgtttttattaaata 320  Q
    |||||||||| |||||||| || ||||||||||||| | |||||||||||    
T  1118823 gacaattatacaattcttactcataaatttcttactatgtttattaaata 1118774  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 9983180 - 9983216
Alignment:
Q  217 tatgaccattaaccgaattaaagataattatataatt 253  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  9983180 tatgaccattgaccgaattaaagacaattatataatt 9983216  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 31402241 - 31402123
Alignment:
Q  4 atctcgaagaaaataataaattaatttacatattatttatttaggaacaaaattattaatatggcaacagagtttcgatcaaccc-tcttcttgaaataa 102  Q
    ||||| || |||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||  |||| || |||||| | ||| ||||||||||||||    
T  31402241 atctcaaacaaaataataaattaatttacat-ttatttatttatgaaccaaattattaatgtgataacaaagattcgataaccccctcttcttgaaataa 31402143  T
Q  103 tacacacccatactaacaag 122  Q
    | |||||||  |||||||||    
T  31402142 ttcacaccctgactaacaag 31402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 31402035 - 31401986
Alignment:
Q  271 gacaattatataattcttattcttaaatttcttactgtttttattaaata 320  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||||||||    
T  31402035 gacaattatataattcttactaataaatttcttactatttttattaaata 31401986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 31402061 - 31402021
Alignment:
Q  213 tttgtatgaccattaaccgaattaaagataattatataatt 253  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  31402061 tttgtatgaccattgaccaaattaaagacaattatataatt 31402021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 16215233 - 16215173
Alignment:
Q  76 tttcgatcaaccctcttcttgaaataatacacacccatactaacaagatagatagaaaaca 136  Q
    ||||||||||| |||||| ||||||||| |||||||||||||| ||||||| |||| ||||    
T  16215233 tttcgatcaactctcttcgtgaaataattcacacccatactaataagatagctagataaca 16215173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 16217886 - 16217826
Alignment:
Q  76 tttcgatcaaccctcttcttgaaataatacacacccatactaacaagatagatagaaaaca 136  Q
    ||||||||||| |||||| ||||||||| |||||||||||||| ||||||| |||| ||||    
T  16217886 tttcgatcaactctcttcgtgaaataattcacacccatactaataagatagctagataaca 16217826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 16227453 - 16227393
Alignment:
Q  76 tttcgatcaaccctcttcttgaaataatacacacccatactaacaagatagatagaaaaca 136  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| | ||||| |||||||||    
T  16227453 tttcgatcaactctcttcttgaaataattcacacccttactaataggatagctagaaaaca 16227393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 16215093 - 16215053
Alignment:
Q  213 tttgtatgaccattaaccgaattaaagataattatataatt 253  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  16215093 tttgtatgaccattgaccaaattaaagacaattatataatt 16215053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 16217746 - 16217706
Alignment:
Q  213 tttgtatgaccattaaccgaattaaagataattatataatt 253  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  16217746 tttgtatgaccattgaccaaattaaagacaattatataatt 16217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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