View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_16 (Length: 433)
Name: NF18089_low_16
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 210 - 419
Target Start/End: Complemental strand, 46875576 - 46875367
Alignment:
| Q |
210 |
tctctccacacttaaaattcaaattttcacacaaaccatcgtcgaaactaaatgtcatcgtacaaattaactgagttaggaagggtgacaaggggtagcc |
309 |
Q |
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| T |
46875576 |
tctctccacacttaaaattcaaattttcacacaaaccatcgtcgaaactaaatgtcatcgtacaaattaactgagtgaggaagggtgacaaggggtagcc |
46875477 |
T |
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| Q |
310 |
gtgaatggcgtagagggtttccgacgaaagcattatacttcaagtttatggacatgaactttgcagaagaagaagagaagtttagggtgagagtctgttt |
409 |
Q |
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| T |
46875476 |
gtgaatggcgtagagggtttccgacgaaagcattatacttcaagtttatggacatgaactttgcagaagaagaagagaagtgtagggtgagagtctgttt |
46875377 |
T |
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| Q |
410 |
tggaaaaagg |
419 |
Q |
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|||||||||| |
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| T |
46875376 |
tggaaaaagg |
46875367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 46875779 - 46875643
Alignment:
| Q |
8 |
cgaagaatataatcaccaaacaaatttcaacgcaatttagacaaagattatttcaattcattgaatatttgattcaaaacaagtttaatcaaactctcag |
107 |
Q |
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| T |
46875779 |
cgaagaaaataatcaccaaacaaatttcaacgcaatttagacaaagattatttcaattcattgaatatttgattcaaaacaagtttaatcaaactctcag |
46875680 |
T |
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| Q |
108 |
taaattaattaaatcattagagaatcaataagaacct |
144 |
Q |
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| T |
46875679 |
taaattaattaaatcattagagaatcaataagaacct |
46875643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 46877420 - 46877361
Alignment:
| Q |
71 |
aatatttgattcaaaacaagtttaatcaaactctcagtaaattaattaaatcattagaga |
130 |
Q |
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| T |
46877420 |
aatatttgattcaaatcaagtttaatcaaactctcagtatattaattaaatcaatagaga |
46877361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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